« Back to Nicotiana attenuata search


Detailed information on CNT30505424


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677703Nicotiana attenuataSetaria viridis48.2862.8596.44225forward
CNT30184864Nicotiana attenuataSecale cereale48.0738.6996.88224forward
CNT30224696Nicotiana attenuataHordeum vulgare42.9290.9197200forward
CNT30397001Nicotiana attenuataTriticum turgidum92.0646.4894.64429forward
CNT30508435Nicotiana attenuataSolanum lycopersicum26.616.4586.29124reverse complement
CNT30203049Nicotiana attenuataHelianthus annuus51.0790.1598.74238forward
CNT30364089Nicotiana attenuataSorghum bicolor43.7844.9392.16204forward
CNT30595740Nicotiana attenuataOryza meridionalis29.1852.9297.06136reverse complement
CNT30574572Nicotiana attenuataVitis vinifera49.143.499.56229forward

Expression of CNT30505424

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MDARALRRKDAFRGERPWGDTVCDPWISDRETVSKLRG*

Sequence

>CNT30505424
GGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGT
ATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTTAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGT
TAGTAGCGGCGAGCGAGAGCGGATTGGGGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGT
ATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTTAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGT
TAGTAGCGGCGAGCGAGAGCGGATTGGGGGTTTGAAGAAAAACAAACACGAAGCTTCGTTCCTCAG