« Back to Nicotiana attenuata search


Detailed information on CNT30505351


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3C1H1|ATPI_NICSY, E-value = 9e-149

BLAST vs NONCODE:
NONATHT002192, E-value = 1e-147

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696665Nicotiana attenuataOryza sativa21.5513.2488.25749forward
CNT30678565Nicotiana attenuataSetaria viridis5.4120.4890.96188forward
CNT30535895Nicotiana attenuataEucalyptus grandis4.1125.8193.01143forward
CNT30317837Nicotiana attenuataCorylus avellana14.1846.8688.44493forward
CNT30703171Nicotiana attenuataQuercus lobata23.256.7890.47808forward
CNT30617713Nicotiana attenuataSesamum indicum17.8931.7391.64622forward
CNT30282912Nicotiana attenuataChenopodium quinoa14.3646.5590.98499forward
CNT3021394Nicotiana attenuataCitrullus lanatus17.8498.8893.39620forward
CNT30198909Nicotiana attenuataPisum sativum15.6224.0789.5543forward
CNT30486613Nicotiana attenuataOlea europaea1.9922.1288.4169forward
CNT30709297Nicotiana attenuataGlycine max2.2722.787.3479reverse complement
CNT30160646Nicotiana attenuataPistacia vera1.6424.6887.7257reverse complement
CNT3095993Nicotiana attenuataSolanum tuberosum30.3226.3496.391054forward
CNT30291829Nicotiana attenuataTriticum aestivum21.551987.98749forward
CNT30226738Nicotiana attenuataHordeum vulgare9.8426.2387.43342forward
CNT30567675Nicotiana attenuataActinidia chinensis11.1642.8783.76388forward
CNT3086153Nicotiana attenuataVigna radiata3.2250.6885.71112reverse complement
CNT30541450Nicotiana attenuataBrassica napus21.6926.8288.99754forward
CNT30238613Nicotiana attenuataBrassica oleracea10.167.6385.19351forward
CNT30511101Nicotiana attenuataSolanum lycopersicum35.1310093.451221forward
CNT30554216Nicotiana attenuataOryza glaberrima13.6973.0186.34476forward
CNT30172770Nicotiana attenuataTrifolium pratense12.7787.0687.16444forward
CNT30145240Nicotiana attenuataMedicago truncatula4.9530.9494.77172forward
CNT30660677Nicotiana attenuataTriticum dicoccoides14.0136.5185.83487forward
CNT30598585Nicotiana attenuataFraxinus excelsior15.0561.3194.26523forward
CNT3017990Nicotiana attenuataZea mays21.5522.6488.79749forward
CNT30609661Nicotiana attenuataGossypium raimondii11.7723.7985.82409forward
CNT30232563Nicotiana attenuataAnanas comosus21.5221.8390.64748forward
CNT30205079Nicotiana attenuataHelianthus annuus14.8771.5191.3517forward
CNT30626489Nicotiana attenuataDaucus carota5.9823.7296.15208forward
CNT30621081Nicotiana attenuataCajanus cajan13.6445.488.61474forward
CNT30409854Nicotiana attenuataPapaver somniferum14.6476.7790.77509forward
CNT3057337Nicotiana attenuataAmborella trichopoda21.6120.1585.75751forward
CNT30551824Nicotiana attenuataOryza brachyantha4.8669.2682.84169forward
CNT30726491Nicotiana attenuataLupinus angustifolius21.6364.5589.76752forward

Expression of CNT30505351

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MEHDRTFILPCPLKKLNFKQNFLIQPSLCLLESDILNTN*

>peptide 2 (41 aa)
MSFFHNVNQAFILDSILFENQASKHLEGLAYSYSITDTSLS*

>peptide 3 (44 aa)
MLIPHPQISPSRRFFSQRIKNWRREILIEFEKANDKSKAIKYEK*

>peptide 4 (51 aa)
MTGIGTTKGTKETRTTTTNSSAKIFPKSRKLSDKGFVKSSKMLMGKRIGVG*

>peptide 5 (37 aa)
MVCGFRTAIVAEPNKIAITTQEVISTWPCTWKPPICQ*

>peptide 6 (34 aa)
MIFQGKRAPDQLETKINKNIVPIKGTQGPYSSPI*

Sequence

>CNT30505351
GAGTTCCTAGAGCTCCTCGTAAGGCTTGTTGGAAAACCCGTTGTCGGACTTGATTAATCGCCCTTTGCTGTTCAAACTGAATCGTTTCGTTTTTGTAATT
TTCTAATTGTTCCAAAGTCTTATAAGTTGAATTAATCAAATTCAATTTTTCTCGTTCTATTTCGGAGTATCCATTCACTCGAAACTGCTCGGCTTCGCTT
TCTACTTTCCGTAAGCGAGAACGAGCTTTTTCGAGTTGTTCAATAGCCCCCCCACGCAGTTCTTCTGAATTTCGAATAGTATTCAAGATCCTCTGTTTTC
GATTATCTAATAAATCACTTAACACTCCCTTTCCAAAAAAAATCAATACACCAAGCACTACACTTAGATTTATTGGATTTGTTGCTAAAATATCGGTATT
AAACCCGAAACTCCCGGCAGATGGCCAGTGGCCCAAAGAAACGAAAGAATCGGTTACGTTTTTCATATGATCTCCTCTTATAGATAGACTAAAAAATCGA
ACAGAGTTCTTTTTGTAGCACTTCGCCCCTCTTTTTATTTATTCTTTTTATTTATTCTTTTTATTTATTCTTTTTATTTATTCTTTTATTTTTTCTGAAA
TTGAGTCAAAAAATAAAAAATATTCGAGTTAGTTATAAATTATGAACTAATGAACTAGCCCTTTTATTGGTTATTGGAACACTAACACTTACTAAAAAGA
GTTTCCCTTGGTCTATGAACGGGAAGGATGAAAGCGAGTCAGTATGCTAATTCCTCATCCGCAAATCAGCCCTTCCCGTAGGTTCTTTTCTCAAAGAATA
AAGAATTGGAGGAGGGAAATCTTGATAGAATTTGAAAAAGCAAACGACAAGTCGAAGGCAATAAAATATGAAAAATAAATACATTTTTCATATTTCTAAG
CTAAGATTAAACAAAAGGATTCGCAAATAAAAGTGCTAATGCTACAACCAGTCCATAAATTGTTAAAGCTTCCATAAAAGCTAGACTAAGCAATAGCGTA
CCTCGTATTTTTCCCTCTGCCTCAGGCTGTCTCGCGATACCCTCTACAGCTTGACCCGCAGCAGTCCCTTGACCAACTCCAGGTCCAATAGAAGCAAGCC
CTACGGCCAATCCAGCAGCAATAACGGAAGCGGCAGAAATCAGTGGATTCATGATAAGTTCCTCGTACCAAAAAAAAGAAATGGTTAATGATACAATCAA
CCAATGAGTTATGACTTAATTATTCCCTCGCTAGGATTCATCCAGTCGAAGTAACTAAGAACTTCGGATTGAAGTAATAAGATTATTGAATCATCAGAAC
TACTTCGATATATCTTTTTTACTTTTTAGCCACAGAGTCTTTGTGAACCCATACGACTTTCGTTCTTCCATTTCTTGGTTCGAACTGTTAGTTGAATTAT
TTCTTGATTTCATCCGTTTATTCATTCAATTCACAGTCACAAGGGGCCGGAAGGACTTCTAGTCTATTAGAATCCCCTAGAGTAGTAAAATATATCTTTA
GTTCATTTCATATATAACTAGCACTAGTCAATATCTAATATCACATATACATGTCTTTCTTCCATAACGTAAACCAAGCATTCATCTTAGATTCAATCCT
ATTCGAGAATCAAGCGTCGAAACATCTAGAAGGGTTGGCTTATAGTTATTCAATTACAGATACCTCCCTCTCCTAACCGACCCTTTCTAAAATACTCAAA
AAAATCCCTTTTTTGTAAATTCTTTTGAACCTTACCTTTTCTTATTATTCCACCTAGATAAATCTAAATGGACAAATTGATTAGGCCGAATAATTCCATA
TGTATAGAAATATCATTATTTGATTGATCTAAGTTCATGCAATTTATTAATAAAAATGAATAATTTATTTATTAATTATTAATATTTTGGTCAATCGTTG
AATAAAATCAACTGAAAGGGAAATCGTTTTGCCCTTTTTTATTTAATTTAATTACACGTCGTAAACCTATACAACAAGAATTCTAATTATTGACAAAAAT
TCTTATATTCAAATAGTTTTAACAATGAATTAATAATGAGATGGACTAAGCAATCTAAAGTGAATATTCATTGAGACGAAGTATGATATTAAGTGAAGGA
AAGGGGAATTTTAGGAAAAAGATCTTTTTTTTTAGATCTTTTTCCCCTTACTCTTTAATATCATCGTAATTTTTTTGCTATCACTCTAGATCGTATATAA
AAAAGTTGTATATTTAGATTCCCCTATTCTATTTCCTAAGTTAAGTAATTCTCTTGAGCCACCCACCATATTTATACATTGCTTTGGGCTAAGCTAAATA
AGACTATTTCAATGATGGCCCTCCATGGATTCACCTATATAAGCCGCGGCTAAAGTTGCAAAAATAAGAGCTTGAATACCACTTGTAAATAATCCAAGGA
GCATGACAGGTATAGGAACTACTAAAGGTACTAAAGAAACAAGAACAACAACTACTAATTCATCAGCTAAGATATTCCCGAAAAGTCGAAAACTAAGTGA
TAAAGGTTTTGTGAAATCTTCTAAGATGTTAATGGGTAAAAGGATTGGGGTTGGTTGAATATATTTTCCGAAATAACCTAATCCTTTTTTTGTAAGACCC
GCATAGAAATATGCCACTGATGTGAGTAAAGCCAAAGCAACAGTAGTATTTATATCATTCGTGGGTGCGGCTAACTCCCCATGAGGTAATTGTATGATTT
TCCAAGGTAAAAGAGCTCCTGACCAATTAGAAACAAAAATAAATAAAAACATAGTGCCAATAAAAGGAACCCAGGGCCCATATTCTTCGCCAATTTGAGT
TTTACTCACATCTCGAATAAATTCAAGAACATATTCGAAGAAATTCTGACCCCCGGTCGGAATGGTTTGTGGGTTCCGAACAGCTATAGTGGCTGAACCT
AATAAGATAGCAATTACAACCCAAGAAGTAATAAGTACTTGGCCATGTACTTGGAAACCCCCTATTTGCCAATAGAAATGTTGGCCTACTTCCACACCGG
ATATATCGTATAACCCCTTTAGAGTATTGATGGAACATGATAGAACATTCATATTGCCTTGCCCTCTGAAAAAATTGAACTTTAAACAAAATTTTTTGAT
TCAACCATCTCTTTGTCTACTTGAATCGGATATTTTGAATACCAACTAAGATTTAGAATACTAATAAATCACATAATATCCCCAGCTATTTTTATCTCTT
TTTTGAAATTCAGAAATAGTAAGCGATTCCATAAGGGATTTCTGAAGTAAGTTATTTATCTTATTATGTTATTATTAATCAAGGATTTCTTATATAGCTA
GAACGACCCTCACAAATTGCGAATACTAATTTGTTAAGAATTAATCGGATTGAGGATATCGCGTCATCATTCGCTGGAATTGAAATATCTGCGAGATCGG
GGTCACAATTTGTATCGGTTAAACAAATTGTTGGAATTCCTAAAGTAATACACTCTCGCAGGGCCGTATATTCTTC