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Detailed information on CNT30505192


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670523Nicotiana attenuataSetaria viridis30.848.7482.76174forward
CNT30702258Nicotiana attenuataQuercus lobata25.8431.0688.36146forward
CNT30375086Nicotiana attenuataArabidopsis thaliana28.6722.5983.33162forward
CNT30619260Nicotiana attenuataSesamum indicum29.215.4987.27165forward
CNT3020599Nicotiana attenuataCitrullus lanatus34.6917.0384.69196forward
CNT3072357Nicotiana attenuataQuercus suber25.3113.9283.92143forward
CNT30380073Nicotiana attenuataManihot esculenta29.3816.0984.94166forward
CNT30628366Nicotiana attenuataVigna unguiculata22.128.7586.4125forward
CNT30200315Nicotiana attenuataPisum sativum29.5632.3688.62167forward
CNT30543653Nicotiana attenuataBrassica napus22.1218.1287.2125forward
CNT3076654Nicotiana attenuataBrassica juncea25.3130.6285.31143forward
CNT30259492Nicotiana attenuataBrassica rapa34.5155.5682.05195forward
CNT30612249Nicotiana attenuataArabis alpina15.7534.189.8989forward
CNT30607325Nicotiana attenuataGossypium raimondii32.7414.3486.49185forward
CNT30231757Nicotiana attenuataAnanas comosus10.9723.5788.7162forward
CNT30651401Nicotiana attenuataRosa chinensis10.6222.3991.6760forward
CNT30720770Nicotiana attenuataTriticum spelta27.612684.62156forward
CNT30365203Nicotiana attenuataSorghum bicolor28.6775.3580.86162forward
CNT30355186Nicotiana attenuataLactuca sativa29.222.4281.21165forward
CNT30705212Nicotiana attenuataPrunus avium34.3452.7284.02194forward
CNT30645006Nicotiana attenuataCannabis sativa28.519.5684.47161forward
CNT3021984Nicotiana attenuataPopulus trichocarpa30.628.0987.28173forward
CNT30329805Nicotiana attenuataDioscorea rotundata22.6521.8181.25128forward
CNT30103876Nicotiana attenuataOryza rufipogon30.2737.7585.38171forward
CNT30117878Nicotiana attenuataOryza nivara29.9137.5685.21169forward
CNT30723271Nicotiana attenuataLupinus angustifolius33.4571.8687.3189forward

Expression of CNT30505192

Peptides detected in this lncRNA

>peptide 1 (43 aa)
TWLVNEHDITKLGCPVAHPKFMRRPSAKTMMPLLVSGKTHLSV*

>peptide 2 (86 aa)
DLVSERARHHKTGVSSGTSQVHETTLSQNNDATVGVGENPSVGLRLNCDPLDTRVAWRAQIGSISVTITRAPACFKAAAHPFPTSP*

>peptide 3 (80 aa)
MRPSGSEWRHPYKLSNWKPNGSIQLSVYELNNKHYLDIKLIKIYYCMHLQQLRRMSYLIPQNQYCYQGNSSICSEFFWML*

Sequence

>CNT30505192
TGACTTGGTTAGTGAACGAGCACGACATCACAAAACTGGGGTGTCCAGTGGCACATCCCAAGTTCATGAGACGACCCTCAGCCAAAACAATGATGCCACT
GTTGGTGTCGGGGAAAACCCATCTGTCGGTTTGAGGCTTAATTGTGATCCTCTTGACACCAGGGTAGCCTGGAGAGCACAGATCGGGTCAATCTCGGTCA
CAATCACACGGGCACCAGCTTGTTTCAAGGCAGCAGCACATCCCTTTCCGACATCTCCATAACCAGCAACAAGGGCAACCTTACCGGCAATCATAACATC
AGTAGCCCTCATGAGACCATCGGGCAGTGAGTGGCGGCATCCGTACAAGTTGTCGAACTGGAAACCAAATGGATCAATACAACTGTCAGTCTATGAGCTA
AATAACAAGCATTACCTTGATATAAAGCTAATCAAGATCTACTATTGTATGCATCTCCAACAACTAAGGAGAATGTCATACTTGATTCCTCAAAACCAAT
ATTGCTACCAAGGTAACAGCTCCATTTGTTCCGAATTTTTTTGGATGTTATAGGAAATTGTTATT