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Detailed information on CNT30505046


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30559437Nicotiana attenuataActinidia chinensis19.0842.0188.3171forward
CNT30713541Nicotiana attenuataMalus domestica golden16.7469.7788.67150forward
CNT30705533Nicotiana attenuataPrunus avium27.7928.9586.35249forward

Expression of CNT30505046

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MGTTELVNAKDSIEKGILMIHWSGWRNEPEINSCIRRSEKSRVNPTNEIGIERVNIRPRKLFLLQNL

>peptide 2 (43 aa)
MWINGRMREREKKNTNDIKFQYVRSMSNLIKGSVIKHQYAFIP*

>peptide 3 (40 aa)
MNLLIEIEQKIKSFEPIKTEKIDSRTNFILSSIVEFGPNH*

>peptide 4 (36 aa)
SIGHQNLDISRRGIILLLVFPFYPMIEQKKKNSFFF*

Sequence

>CNT30505046
GGAGTATTGGGCATCAAAATTTGGATATTTCTAGACGAGGAATAATTTTACTACTTGTCTTTCCCTTCTATCCAATGATTGAACAAAAAAAGAAAAATTC
ATTCTTTTTCTAATCAATCAAGGGGAACATTTATAATTCTTAATTCTATAAGGTTGAATAAAAATTTGATTGACCATTTGATATAATTGCTATGCTTAGT
GTGTGACTCGTTGGTTTTTTAGGGTTAGGATTAAAAAAGACCAGCCCACATAGTATGAACTAAAAACTATAGAACTAATAACCAACCCATCACTTCGCAT
TATCTGGATCTAAAGAACCAGTCAAGATATGATATATAGGTCATATCTTTGTAGCAACTGAAATCTTTTGCATAAACAAAAAAGGAAATCTGATTCTAAG
TTGTAAAGCAAAATAGACAAAAAAGATGTGGATAAATGGAAGGATGAGAGAAAGAGAGAAAAAGAATACCAATGATATAAAATTCCAATATGTAAGGTCT
ATGAGTAATCTCATAAAAGGCAGTGTAATAAAGCATCAATACGCATTCATACCATAATAAAATGAATCTTCTTATAGAAATAGAACAAAAAATCAAGAGC
TTCGAGCCAATAAAGACTGAGAAGATTGACTCAAGAACCAATTTCATTCTGAGCTCCATTGTAGAATTCGGACCTAACCATTAAGTAAGAAGTGATGGGA
ACGACGGAACTTGTGAATGCAAAAGATTCTATTGAAAAAGGAATCTTAATGATTCACTGGTCGGGATGGCGGAACGAACCAGAGATTAATTCATGTATTC
GGAGATCTGAGAAGTCACGAGTTAACCCTACAAATGAAATAGGGATTGAAAGAGTCAATATTCGCCCGCGAAAACTTTTTTTATTGCAAAATTTAG