« Back to Nicotiana attenuata search


Detailed information on CNT30504983


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Nicotiana attenuataOryza sativa21.212.3298.7386reverse complement
CNT30678383Nicotiana attenuataSetaria viridis5.8831.2996.26107forward
CNT30524653Nicotiana attenuataSetaria italica17.6326.7999.38321forward
CNT30550263Nicotiana attenuataIpomoea triloba33.835.3498.7616forward
CNT30632593Nicotiana attenuataVigna unguiculata32.2934.8397.45588forward
CNT30221870Nicotiana attenuataHordeum vulgare21.231.1599.22386forward
CNT30585815Nicotiana attenuataMusa acuminata21.215.997.41386forward
CNT30234810Nicotiana attenuataBrassica oleracea31.876.4993.96579reverse complement
CNT30147389Nicotiana attenuataMedicago truncatula29.0557.1998.3529reverse complement
CNT30248040Nicotiana attenuataAvena sativa21.228.6899.22386reverse complement
CNT30662061Nicotiana attenuataTriticum dicoccoides21.220.1198.96386reverse complement
CNT30143344Nicotiana attenuataLolium perenne21.217.2699.22386reverse complement
CNT3016633Nicotiana attenuataZea mays21.220.299.22386reverse complement
CNT30229838Nicotiana attenuataAnanas comosus11.7548.3197.66214reverse complement
CNT30218527Nicotiana attenuataKalanchoe fedtschenkoi33.8341.3797.56616reverse complement
CNT30203595Nicotiana attenuataHelianthus annuus32.6232.4297.31594forward
CNT30682017Nicotiana attenuataTriticum urartu21.247.6598.7386forward
CNT30721611Nicotiana attenuataTriticum spelta12.348.5998.66224reverse complement
CNT30154718Nicotiana attenuataPrunus persica30.4880.0996.22555forward
CNT30418817Nicotiana attenuataPapaver somniferum5.6648.5894.17103forward
CNT30147862Nicotiana attenuataBrachypodium distachyon7.9154.7599.31144reverse complement
CNT30104484Nicotiana attenuataOryza rufipogon4.4530.3498.7781reverse complement
CNT30575744Nicotiana attenuataOryza barthii19.4424.8197.18354forward
CNT30582488Nicotiana attenuataEchinochloa crusgalli21.231.899.22386forward
CNT30116696Nicotiana attenuataOryza nivara21.29.7498.96386reverse complement
CNT30604605Nicotiana attenuataOryza punctata4.7237.2391.8686reverse complement

Expression of CNT30504983

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MFGVINIIVGLGFTEEEGAKSQLPDYYYTKRTPRVD*

>peptide 2 (42 aa)
MMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSNNIA*

>peptide 3 (41 aa)
MIHSCSKRVVDKHVLLGGGSRQWIPFSHPSLQLVGQIPLSK*

>peptide 4 (31 aa)
MQVERCFRGAGQKEKRLLAKGSLSRPGGEKG*

Sequence

>CNT30504983
CCGCAATGGAGTCCTCACCCCTGCCTTTAGAAGAGAAAGCCTTCATACTATATTCGACTTGCATGTGTTAAGCATATAACCTTTCATCACATTCAGTCGA
CTTTCAATTCAATCTCTGAGGAAGAGAAAGATATAGTTTATATACAGAAGAAACCTAGTTTTGAGTTCTATTAAGGACCCGAAGAAGACAGGAGAACTGG
GCATTCACAAGACTGCTTTGATTCTCATCATGATACATTCTTGTAGTAAGCGGGTGGTTGATAAACACGTATTATTGGGAGGGGGCAGCAGGCAATGGAT
ACCGTTCTCGCACCCGAGCCTGCAGTTGGTAGGTCAAATCCCTCTGTCCAAGTGATTGAGTTGAAGCTTTGGGCATAGAGCGGAGCGAGCCCGGGGAGAG
GAGTAGAGTCCAGCAACATTGAGCCCCAAAATAGAGTTTCTATTCAAATCCCTACTCAACACGGTGCCTTAAGGAGAATCCGAAGCTGGTTGCTAGCGGA
AGTAGCGCGACAAAGAGCAAAGCGGGGCATTCACAAAGAAATGGTGTAAGCAGAAGGGAAGGCGCAACGGTTAGCGACTGCCCGAGGAGTGATCCCTCTC
TTATTTTCCCTTTTTTTAAGATAAGAAAGGAGACAATAAGCCCGTCAACATTGAAGCTTCCGCTTTTGGCAGCTGTTAGGCAAGTGATACCGTACGCAAG
TCCGCACCTATATAGTGAGGGTGCGTTAAGGCGAGTTGATGAGCTAATACGGCTGGCTTACTTTTCATATGTATGTGGAGGGAACCTGACGTTAAGCACT
GGGGCCAGCCACAAAGGAATAGGTTTGAATGTTGATATATACCGTCTTTCAGCTGACCTTTCCAAACCATGCTTCGCAATCAAGCTAGAAAAAGACTAAG
CAAGTGCTGTCCTAATGAAATGGCGGATAGTTTAGTATAACATTCATTCCTGACCGCCGCTGCCTGCTTAAGACTAAAAGCTAGTAGTGAGACTTCTATT
CTGCCGCCCTATCTAGTAAGAGCCTCTAAAGCTATGTTTGGCGTAATCAATATAATAGTTGGGCTCGGCTTTACTGAAGAAGAAGGGGCGAAGTCTCAAC
TACCAGACTACTACTATACCAAACGCACTCCACGAGTGGATTAGTTGAGTGACTAGACTGATACTCTAAACGAGACCAATACTATCAAAAAGAAAGTAGC
AAAAATCATAAGAGAAGAAAAGTTCACAGAAGGTTGGGAAATAGTACGCCCGGTTCACCAGGTTCTACCACTGCAGGGCCCAATTATACTCAAAAGAAGA
GTTTGATCCTGGCTCAGAAGGAACGCTAGCTATATGCTTAACACATGCAAGTCGAACGTTGTTTTCGGGGAGCTGGGCAGAAGGAAAAGAGGCTCCTAGC
TAAAGGTAGCTTGTCTCGCCCAGGAGGTGAGAAGGGTTGAGAACAAAGTGGCGAACGGGTGCGTAACGCGTGGGAATCTGCCGAACAGTTCGGGCCAAAT
CCTGAAGAAAGCTAAAAAGCGCTGTTTGATGAGCCTGCGTAGTATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTT
CGGATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAACAATA
TCGCGTGAGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCTA
GCAGCCGCGGTAAGACGGGGG