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Detailed information on CNT30504979


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020362Nicotiana attenuataCitrullus lanatus22.264.7487.33150reverse complement

Expression of CNT30504979

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MQVERCFRGAGQKEKRLLAKGSLSRPGGEKS*

>peptide 2 (42 aa)
MMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSNNIA*

>peptide 3 (33 aa)
FDPGSKGTLAICLTHASRTLFSGSWAEGKEAPS*

Sequence

>CNT30504979
TTTGATCCTGGCTCAAAAGGAACACTAGCTATATGCTTAACACATGCAAGTCGAACGTTGTTTTCGGGGAGCTGGGCAGAAGGAAAAGAGGCTCCTAGCT
AAAGGTAGCTTGTCTCGCCCAGGAGGTGAGAAGAGTTGAGAACAAAGTGGCGAACGGGTGCGTAACGCGTGGGAATCTGCCGAACAGTTCGGGCCAAATC
CTGAAGAAAGCTAAAAAGCGCTGTTTGATGAGCCTGCGTAGTATTAGGTAGCTTGTCTCGCCCAGGAGGTGAGAAGGGTTGAGAACAAAGTGGCGAACGG
GTGCGTAACGCGTGGGAATCTGCCGAACAGTTCGGGCCAAATCCTGAAGAAAGCTAAAAAGCGCTGTTTGATGAGCCTGCGTAGTATTAGGTAGTTGGTC
AGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAG
TGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAACAATATCGCGTGAGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATC
ATGACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCTAGCAGCCGCGGTAAGACGGGGGGGCAAGTGTTC