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Detailed information on CNT30504974


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30440683Nicotiana attenuataAegilops tauschii32.0118.3298.87177forward
CNT3081478Nicotiana attenuataBrassica juncea24.5911.7494.12136forward
CNT3037914Nicotiana attenuataCucumis melo32.018.3293.79177forward
CNT30576076Nicotiana attenuataOryza barthii64.27.998.59355forward

Expression of CNT30504974

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSNNIA*

>peptide 2 (29 aa)
WLKRNTSYMLNTCKSNVVFGELGRRKRGS*

>peptide 3 (30 aa)
GSKGTLAICLTHASRTLFSGSWAEGKEAPS*

>peptide 4 (33 aa)
MQVERCFRGAGQKEKRLLAKGSLSRPGGKEAPS*

Sequence

>CNT30504974
CTGGCTCAAAAGGAACACTAGCTATATGCTTAACACATGCAAGTCGAACGTTGTTTTCGGGGAGCTGGGCAGAAGGAAAAGAGGCTCCTAGCTAAAGGTA
GCTTGTCTCGCCCAGGAGGAAAAGAGGCTCCTAGCTAAAGGTAGCTTGTCTCGCCCAGGAGGTGAGAAGGGTTGAGAACAAAGTGGCGAACGGGTGCGTA
ACGCGTGGGAATCTGCCGAACAGTTCGGGCCAAATCCTGAAGAAAGCTAAAAAGCGCTGTTTGATGAGCCTGCGTAGTATTAGGTAGTTGGTCAGGTAAA
GGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGGAA
TCTTGGACAATGGGCGAAAGCCCGATCCAACAATATCGCGTGAGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAG
GACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCTAGCAGCCGCGGTAAGACGG