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Detailed information on CNT30504948


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3098150Nicotiana attenuataSolanum tuberosum98.184.0890.29412forward
CNT30511842Nicotiana attenuataSolanum lycopersicum98.189.9690.29412forward
CNT30134072Nicotiana attenuataLolium perenne26.1915.1583.64110forward
CNT30231964Nicotiana attenuataAnanas comosus42.1414.5180.79177forward

Expression of CNT30504948

Peptides detected in this lncRNA

>peptide 1 (37 aa)
TNGINIAPISFSLRMLQWITIHFTCACKQKSSSYSFC*

>peptide 2 (53 aa)
MSSNLGFLKWCNKFSFRPVKKLSTTITLSPRAISLSTKWLPTNPAPPVTNILKL

Sequence

>CNT30504948
ACCAATGGGATTAACATTGCCCCAATAAGTTTCAGCCTGAGGATGTTGCAATGGATCACCATACACTTCACTTGTGCTTGTAAGCAAAAATCGAGCTCCT
ATTCTTTTTGCTAATCCCAACATGTTCAATGTTCCCATCACATTTGATATGATGGTCTTGACTGGATTATACTTGTAAGAAACAGGAGAAGCTGGACATG
CCAAATGATAAATCTGATCAACTTCTAACAAAATTGGCTCGACGACGTCGTGTCGAATGAGTTCAAATCTAGGGTTCTTGAAATGGTGTAACAAATTCTC
TTTTCGACCTGTGAAAAAATTATCAACTACAATCACACTATCTCCTCGTGCTATTAGTCTGTCAACCAAATGGCTCCCAACAAATCCAGCTCCACCTGTT
ACTAATATTCTCAAACTCTT