« Back to Nicotiana attenuata search


Detailed information on CNT30504865


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 2e-38

BLAST vs NONCODE:
NONBNAT006984, E-value = 1e-37

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318271Nicotiana attenuataCorylus avellana31.4516.2385.09161forward
CNT30549690Nicotiana attenuataIpomoea triloba29.6936.1984.87152forward
CNT30701199Nicotiana attenuataQuercus lobata38.6717.9784.85198forward
CNT30375418Nicotiana attenuataArabidopsis thaliana18.7540.6883.3396forward
CNT30616210Nicotiana attenuataSesamum indicum37.315.2781.15191forward
CNT3069058Nicotiana attenuataQuercus suber29.117.0385.91149forward
CNT30197034Nicotiana attenuataPisum sativum40.2325.4681.55206forward
CNT3092650Nicotiana attenuataSolanum tuberosum35.5547.485.16182forward
CNT30565712Nicotiana attenuataActinidia chinensis39.6567.8981.77203forward
CNT3086283Nicotiana attenuataVigna radiata29.110.0381.21149forward
CNT30172429Nicotiana attenuataTrifolium pratense39.6531.3881.77203forward
CNT3082467Nicotiana attenuataBrassica juncea36.1325.884.32185forward
CNT30261175Nicotiana attenuataBrassica rapa36.7239.8384.57188forward
CNT30611168Nicotiana attenuataArabis alpina19.9231.4885.29102forward
CNT30211420Nicotiana attenuataHelianthus annuus41.642.9483.57213forward
CNT30620798Nicotiana attenuataCajanus cajan38.0937.3681.54195forward
CNT30360323Nicotiana attenuataLactuca sativa30.8645.1482.28158forward
CNT30414711Nicotiana attenuataPapaver somniferum39.8421.3483.82204forward
CNT30645456Nicotiana attenuataCannabis sativa32.8121.981.55168forward
CNT3052246Nicotiana attenuataAmborella trichopoda35.5515.182.42182forward

Expression of CNT30504865

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MSPLIRFTPPLRAKRLIAGFVIPWMLSLRTFLCLFAPPLPNPLPPFPRPDIFQKFKKEKIEIEFLRF*

Sequence

>CNT30504865
GTCTGTTTTACTTGATTGTATAACGAGGAATTACAATATCCAGACCTTAACAACAGATATTAAAGTACCCTAACTTAAACTGACAACTAACACAAACAGA
AAACACAAACATGAAATCTACAATCACTAACAACAAAACACTATAAACCCCAACTCCCAATATTTAACCTCCAAATCCGTACAAGGTCCTTCCTTGCCTC
TTGAGAGCGTACACAACATCCATAGCAGTAACAGCATCTCGAATCACATTCTCCAAAAAGATCTTAAGAACTCCACGTGTCTCCTCATAGATGAGCCCGC
TGATACGCTTCACTCCTCCTCTACGAGCCAAACGCCTAATTGCTGGCTTTGTAATCCCCTGGATGTTATCCCTCAGAACTTTCCTGTGCCTCTTTGCTCC
TCCTTTGCCCAATCCCTTACCTCCCTTTCCACGTCCAGACATTTTTCAAAAGTTTAAGAAAGAGAAAATTGAAATTGAATTTTTAAGGTTTTGAATTTAA
AAGAGAGAAGTG