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Detailed information on CNT30504596


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673315Nicotiana attenuataSetaria viridis36.593684225forward
CNT30513228Nicotiana attenuataJuglans regia37.7229.8284.48232forward
CNT30375849Nicotiana attenuataArabidopsis thaliana30.2416.6183.33186forward
CNT30249492Nicotiana attenuataAvena sativa18.0532.5582.88111forward
CNT30282Nicotiana attenuataZea mays23.948.3681.63147forward
CNT30650401Nicotiana attenuataRosa chinensis36.4225.4384.82224forward
CNT30211728Nicotiana attenuataHelianthus annuus8.6220.0890.5753forward
CNT30624889Nicotiana attenuataDaucus carota20.6533.4288.19127forward
CNT30721247Nicotiana attenuataTriticum spelta25.6930.182.91158forward
CNT30367469Nicotiana attenuataSorghum bicolor38.0533.5782.91234forward
CNT3027382Nicotiana attenuataPopulus trichocarpa38.8649.3887.03239forward
CNT30118300Nicotiana attenuataCitrus clementina19.8444.8586.89122forward
CNT30148668Nicotiana attenuataBrachypodium distachyon15.9332.1383.6798forward
CNT30118099Nicotiana attenuataOryza nivara27.4820.7483.43169forward

Expression of CNT30504596

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MSNAPRGLFLPTGSLGAGKLGADGLGCRNHGLECWLHLGVLACLKTTVRVDPQDVGVKNSKHLVHSISDLFS*

>peptide 2 (79 aa)
MPRGVCFFQLAHLALASWVRMALAAETMAWSAGFTSVYLRVLRPQSGLTHKMLVSRTASILFTLSAISSVDGILGEWMS*

Sequence

>CNT30504596
GGATAACATCGTCAAAATAGAGCCGATATGATTTCCTCCAGAGAGAGAATGCTCTAAAGAAAAACATAAAAAAGAAGAATGGGATGCCCGGGGACAGTAC
TACTAACCTACAGAATAATATCATAGCGAGCACAATTATTAAAAACCAATAGAAAATTTCCTTTTCAAGTTAAAGAACACCATGAGCAATGCCCCGAGGG
GTTTGTTTCTTCCAACTGGCTCACTTGGCGCTGGCAAGCTGGGTGCGGATGGCCTTGGCTGCAGAAACCATGGCTTGGAGTGCTGGCTTCACCTCGGTGT
ACTTGCGTGTCTTAAGACCACAGTCAGGGTTGACCCACAAGATGTTGGTGTCAAGAACAGCAAGCATCTTGTTCACTCTATCAGCGATCTCTTCAGTTGA
TGGTATTCTTGGAGAGTGGATGTCATAGACACCAGGGCCAATTCCAGCACCATATGTGAGTGTGGATCTGGGTAGTGTCCTGGATATCGACATTGGTGAT
TCTGAAGGAGTGAACGGCCCAGTTCAAGTAGAAAGCATGCTCAGCCTTCCTAAGAGGCAACCCCTCTCTCAATGCAGCTTCATCGATTTGGATGACAGTG
ATGCCTGCCTTCTCC