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Detailed information on CNT30504586


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 3e-12

BLAST vs NONCODE:
NONSLYT003133, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670969Nicotiana attenuataSetaria viridis57.5888.8798.031014reverse complement
CNT30702366Nicotiana attenuataQuercus lobata56.5610098.29996reverse complement
CNT30712072Nicotiana attenuataGlycine max18.1750.4795.62320forward
CNT30637481Nicotiana attenuataCapsicum annuum25.4410098.44448forward
CNT30221833Nicotiana attenuataHordeum vulgare52.3667.5596.1922forward
CNT30508923Nicotiana attenuataSolanum lycopersicum17.0990.1299.67301forward
CNT30554477Nicotiana attenuataOryza glaberrima21.9853.5397.16387reverse complement
CNT30438197Nicotiana attenuataAegilops tauschii57.7597.1397.841017forward
CNT30258490Nicotiana attenuataAvena sativa20.7850.6998.36366forward
CNT30202530Nicotiana attenuataHelianthus annuus37.5990.3198.19662forward
CNT30369921Nicotiana attenuataOryza glumipatula12.8998.798.68227forward
CNT30320583Nicotiana attenuataAsparagus officinalis15.1624.3498.88267forward
CNT3038324Nicotiana attenuataCucumis melo85.4679.895.811505reverse complement
CNT3099709Nicotiana attenuataOryza rufipogon21.0717.0497.3371forward

Expression of CNT30504586

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MKESQPIPEIAVSLATSLVAAPYLLIRNYYHKKVAPISKGAYALHDFLMLWGLED*

>peptide 2 (37 aa)
MEKGCLCCGFRSCKNFFFREKVLSFNIMIGSTRPDHE*

>peptide 3 (35 aa)
MGSRRLNLAANPSQQAEKLSQEHGERGLFNLAKYR*

Sequence

>CNT30504586
TCATAGTCAACAAGGTTGAAACTTCGAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACCGTACCCCAAACCGACACAGGTGAACAA
GTAGAGTATACTAGGGCACTTGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAG
GAAAGCGGCACATACCAGGGGTAGAGAATGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACATGATGTATAGAGTCGACACCTGCCCGGTGCTGGA
AGGTCGGAAGGAGAAGTATTATAAGCTTTGAATGGAAGCCCAGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTAGCATAA
GTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCTGACATGGACCCGGTGAAATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAG
ACGGTAAGACCCCGTGCACCTTAACTATAGCTTCGCAGTGACAACCTTAATCGAATGTATAGGATAGGTGGGAGGTGGTGACACACAACGACCAATCCTG
AAAGACCACTCTTTCGTCTAAGGATGCCTAACCACCGCACCGATCATTCGGGGGAGGCGGGACACTGCGAGGTGGGTAGTTTATTTGGGGCGGATGCCTC
CTAAAGAGTAACGGAGGTGTGCGAAGATAGGCTCAAGCTAAGATTCTGCTCGTGAGCGTAATGGTATAAGCCTGCCTGACTGTGAGACCGACTGGTCGAA
CAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCC
AAGAGCTCTTATCGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAGGGTTCGGTTGTTCGCCGATTCAAG
TGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGGTTCCTATCTACCGTTGGTGTTAAAGGGAGAACTGCGAGGAGCCAACCCTAGTACGAGAG
GACTGGGTTGGGCTAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGGAAGAACTGCTGCGCCGCGGGAAATCCT
TCTCTATACAAGTTCTCGGACGAGGTTTTTGAACAGAACTTCGATAGGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAACG
ACTTTCACTTTCCATAACAAAAATGAAAGAAAGTCAACCTATTCCTGAAATTGCGGTCAGTCTCGCTACCTCTTTAGTTGCCGCCCCCTACTTGCTCATT
CGCAATTACTACCACAAGAAAGTCGCCCCTATCTCTAAAGGGGCTTATGCACTCCACGACTTTCTTATGTTATGGGGTCTCGAAGACTGAATTTAGCTGC
CAACCCTAGTCAGCAAGCTGAAAAACTTTCTCAAGAACATGGAGAGCGGGGACTCTTTAACCTGGCAAAATATAGATAAAGAAATGAAAAAATGGGGCGG
TCGTGGTTTATGCTGAATTTTTTTCTTAGATAGAATGAATGGAAAAGGGGTGCTTGTGTTGTGGTTTTCGTAGTTGCAAGAATTTTTTTTTCCGAGAAAA
GGTCCTCTCCTTCAATATCATGATTGGGTCGACCAGGCCAGATCATGAGTGAATAGAAAAA