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Detailed information on CNT30504488


BLAST search results

BLAST vs Swiss-Prot:
sp|P27493|CB22_TOBAC, E-value = 5e-78

BLAST vs NONCODE:
NONMTRT001605, E-value = 1e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30525058Nicotiana attenuataPhaseolus vulgaris71.1666.4783.09343forward
CNT30709036Nicotiana attenuataGlycine max64.3248.2986.77310forward
CNT3055166Nicotiana attenuataAmborella trichopoda60.1735.886.55290forward
CNT30176337Nicotiana attenuataVigna angularis48.5523.0886.75234forward

Expression of CNT30504488

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MGMKLRNKQSFKHKQNLIILSSSSQQLYKAIKQSEF*

>peptide 2 (32 aa)
MASLPFLISFTLSSANASGSSARPNGSKLPPG*

>peptide 3 (40 aa)
MPLGHQQGLMGQSCHQGRVGRQPHREVHQLHGIPQQLPSR*

Sequence

>CNT30504488
TGGCTGTTTGATTAATGGGTATGAAACTCAGAAATAAACAGTCATTTAAACACAAACAAAATCTCATTATATTGTCAAGTAGCTCACAACAGCTTTACAA
GGCCATCAAACAATCAGAATTTTGAGAATGTTTTAAGATTCACTTTCCGGGCACAAAGTTTGTGGCGTATGCCCAAGCGTTGTTGTTAACTGGGTCTGCA
AGGTGGTCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCCTGAACAAAGAATCCGAACATAGAGAACATGGCAAGTCTGCCATTCTTGATCT
CCTTTACTTTGAGCTCAGCGAATGCCTCTGGGTCATCAGCAAGGCCTAATGGGTCAAAGCTGCCACCAGGGTAGAGTGGGTCGACAACCTCACCGAGAGG
TCCACCAGCTACACGGTATCCCTCAACAGCTCCCATCAAGATAACTTGGCATGCCCAGATGGCCAAGATGCTTTGTGCGTGG