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Detailed information on CNT30504332


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693215Nicotiana attenuataOryza sativa20.1210.8385.5169forward
CNT30671134Nicotiana attenuataSetaria viridis26.5335.5583.5291forward
CNT30520501Nicotiana attenuataSetaria italica20.72.9585.9271forward
CNT30404919Nicotiana attenuataBeta vulgaris25.0713.7487.2186forward
CNT30631135Nicotiana attenuataVigna unguiculata27.418.0186.1794forward
CNT3044720Nicotiana attenuataPrunus dulcis20.710.7785.9271forward
CNT30565299Nicotiana attenuataActinidia chinensis25.3637.1888.5187forward
CNT30590285Nicotiana attenuataMusa acuminata26.828.6388.0492forward
CNT3085478Nicotiana attenuataVigna radiata27.4116.4386.1794forward
CNT30436604Nicotiana attenuataAegilops tauschii23.6210.0783.9581forward
CNT30607958Nicotiana attenuataGossypium raimondii25.3621.5983.9187forward
CNT30217604Nicotiana attenuataKalanchoe fedtschenkoi22.1610.6385.5376reverse complement
CNT30213185Nicotiana attenuataHelianthus annuus22.4513.9285.7177forward
CNT30713155Nicotiana attenuataMalus domestica golden25.6634.6589.7788forward
CNT30479061Nicotiana attenuataArabidopsis halleri25.9529.4787.6489forward
CNT30364938Nicotiana attenuataSorghum bicolor26.539.9284.6291forward
CNT30704968Nicotiana attenuataPrunus avium24.29.286.7583forward
CNT3054194Nicotiana attenuataAmborella trichopoda23.321.486.2580forward
CNT30118191Nicotiana attenuataCitrus clementina27.419.0585.1194forward
CNT3038708Nicotiana attenuataCucumis melo20.995.4884.7272forward

Expression of CNT30504332

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MIQQHQKGEKGYIVLKYSRGRNIKRGLFKIN*

Sequence

>CNT30504332
CCACTATTTGACATCTGAAGAAAAGAAAATCACATGATACAACAGCACCAGAAAGGGGAAAAAGGGTACATAGTCTTGAAATATAGCAGGGGAAGAAACA
TAAAACGAGGACTCTTCAAGATAAATTAAGATTTGCTCTTGAATGGAATGGCTCTGATGATTATCTGGTGGTAAACTGCAGCGAGAGCAGCTCCAATGAA
TGGTCCAACCCAGAAGATCCACTGAAAAGAGAACAGCTTAGTTAGATGATAGCAGCTCCAAGGCTCCGGGCGGGGTTGATGCCGGTTCCAGTGATTGGGA
TGGTGGCCAAATGAACCAAGAACACCGCGAATCCAATAGGAAG