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Detailed information on CNT3050411


BLAST search results

BLAST vs Swiss-Prot:
sp|O49169|EF1A_MANES, E-value = 1e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30265127Cucumis sativusBrassica rapa69.2398.8280.56252forward

Expression of CNT3050411

Peptides detected in this lncRNA

>peptide 1 (29 aa)
NHLNKSSISVLQKLGLFLQFFTRSPVNLS*

>peptide 2 (39 aa)
GIILTNPASPFFKNLGSFSSSLPDRLSILVKISANLTAM*

Sequence

>CNT3050411
GGAATCATCTTAACAAATCCAGCATCTCCGTTCTTCAAAAACTTGGGCTCTTTCTCCAGTTCTTTACCAGATCGCCTGTCAATCTTAGTTAAAATCTCGG
CAAATTTGACAGCAATGTGAGATGTGTGGCAATCGAGTACAGGTGCATAACCATTTCCAATCTGTCCTGGATGGATCATCCTTGGAATTTGAGGCAACAT
AACCACGCTTGAGATCCTTCACAGCAACATTCTTCACGTTGAACCCCACGTTGTCACCAGGGAGAGCTTCTTGGAGAGCTTCGTGGTGCATCTCCACAGA
CTTAACTTCAGTAGTCAGTCCAGATGGAGCAAAGGGGCATAACCATTTCCAATCTGTCCTGGAT