Detailed information on CNT3050381


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONPOPT001132, E-value = 1e-30

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693384Cucumis sativusOryza sativa51.5932.483.95162forward
CNT30502101Cucumis sativusNicotiana attenuata53.535.7486.9168forward
CNT30719929Cucumis sativusTriticum spelta49.3626.6887.1155forward
CNT30427845Cucumis sativusPapaver somniferum55.117.4687.86173forward
CNT3022534Cucumis sativusPopulus trichocarpa53.552.0184.52168forward
CNT30332063Cucumis sativusDioscorea rotundata52.5540.2485.45165forward
CNT30175006Cucumis sativusVigna angularis50.6430.8189.31159forward

Expression of CNT3050381

Peptides detected in this lncRNA

>peptide 1 (42 aa)
RIIIARRRTKYVGLNKNDNKSTLRKQNPCQELNSTNRSSNSR*

Sequence

>CNT3050381
AAGGATAATAATCGCAAGAAGACGGACTAAGTATGTGGGTCTCAATAAAAACGATAATAAATCGACATTAAGAAAACAAAATCCATGTCAAGAACTAAAC
TCCACAAACAGGAGTAGCAATTCTAGATAAATTCAACGACATCAAACCACATTTACCGCAGTAGTGGCGGTCAAAGTGATTGGCCATGAAAGTTCCAGCG
CCGCACTCAGCGTTAGGGCACTCCTTCCTAAGCCTCTGCACCTTTCCAGAGTCATCGACCTTGTAGAACTGAAGGACGGCGAGCTTCACCTTCTTGTGCT
TGTGCTTGATCTTC