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Detailed information on CNT30503775


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000337, E-value = 1e-105

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530404Nicotiana attenuataEucalyptus grandis32.9641.1382.19146forward
CNT30375121Nicotiana attenuataArabidopsis thaliana33.1820.1182.99147forward
CNT30615836Nicotiana attenuataSesamum indicum81.0493.7384.68359forward
CNT3020608Nicotiana attenuataCitrullus lanatus68.8569.1681.31305forward
CNT3091042Nicotiana attenuataSolanum tuberosum81.4998.993.07361forward
CNT30508626Nicotiana attenuataSolanum lycopersicum75.498.8291.92334forward
CNT30145616Nicotiana attenuataMedicago truncatula91.6589.4382.51406forward
CNT30718631Nicotiana attenuataMalus domestica golden77.8860.182.32345forward
CNT30477892Nicotiana attenuataArabidopsis halleri82.1734.0281.32364forward
CNT30425316Nicotiana attenuataPapaver somniferum87.8180.7181.75389forward
CNT30645151Nicotiana attenuataCannabis sativa77.6536.182.56344forward
CNT3055709Nicotiana attenuataAmborella trichopoda73.5949.8583.13326forward
CNT30325711Nicotiana attenuataAsparagus officinalis43.7960.8285.57194forward
CNT30603529Nicotiana attenuataOryza punctata35.4420.5280.89157forward
CNT3050773Nicotiana attenuataCucumis sativus74.9459.0781.02332forward

Expression of CNT30503775

Peptides detected in this lncRNA

>peptide 1 (46 aa)
GINIAPVSFDLRMLQRITIHFTGASEQKSCSYSFCQPQHVQCSHHI*

>peptide 2 (85 aa)
MNRRSRASQMINLINFKQNWLHHIMSNHLEFRVSEMVQQILLPTSEEIINHNHTIPSLYQPIHQMAPNKTSSTCYQYSQLLFLQS*

Sequence

>CNT30503775
ATGGGATTAACATTGCCCCAGTAAGTTTCGACTTGAGGATGCTGCAAAGGATCACCATACACTTCACTGGTGCTAGTGAGCAGAAATCGTGCTCCTACTC
TTTTTGCCAGCCCCAACATGTTCAATGTTCCCATCACATTTGATATGATGGTCTTGACAGGATTATACTTGTAATGAACAGGAGAAGCAGGGCAAGCCAA
ATGATAAATCTGATCAACTTCAAGCAAAATTGGCTCCACCACATCATGTCTAACCATCTCGAATTTAGGGTTTCTGAAATGGTGCAACAAATTCTCCTTC
CGACCAGTGAAGAAATTATCAACCACAATCACACTATCCCCTCTCTCTATCAACCTATCCACCAAATGGCTCCCAACAAAACCAGCTCCACCTGTTACCA
ATACTCTCAACTTCTTTTTCTTCAATCCTAATGGCACCTTTCC