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Detailed information on CNT30503696


BLAST search results

BLAST vs Swiss-Prot:
sp|Q589A5|NU2C_SILLA, E-value = 3e-36

BLAST vs NONCODE:
NONVVIT001954, E-value = 3e-77

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30406248Nicotiana attenuataBeta vulgaris9.5240.0899.01101forward
CNT30201828Nicotiana attenuataPisum sativum18.9438.898.01201forward
CNT30147748Nicotiana attenuataBrachypodium distachyon19.2330.2799.51204forward

Expression of CNT30503696

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MHPNCCCDGVSLYSTYGYWFWRFKHSGHGSGC*

>peptide 2 (40 aa)
MVFPCILHTDTGFGDSSIQGTVAAVDYSGHGLHGDSGVAA*

>peptide 3 (64 aa)
IGLKREPKKDLLCIILHNLECYQFRYVDQIIQCKQKFLDSWRYRTAYKLSCLHIHHLSLQQLFQ*

Sequence

>CNT30503696
ATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTTGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAATGCA
AGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACA
TATCGGATAAAGGACTCAACATATACACACAATTAGGGGAGACCAAAATCGGACCCCCTCATCTAGGTCTTGAGCCGCTGCTCATCTTCTTCTCGAAGAA
TCAACCAAATTCATCCAAAAAACTTCACCTGTTTCAGCTATCTTTTCCCAAGCACTAAAACACAAAGTTTCAACACCATGTAAATCCTCCGTATCCTATT
ACATCCATCTATGAAAGAAACTCCATTGTTTCACCATTAAACCATCACAAATCAGCCCCAAAATCATCAGAAAAATACCTCATGTAAACCAGTTGAAGCC
ATCTTAAATTCAAGTGAAACCCCGTTTTAGAGCTCCAACGGAAACAGAGGCGAGTGAAAGAGCAGCTGCTGGTCATTTTCAAGGTTGCCGGCGAGGTCCC
CTCCGTGGTCTTTGGCAAATTTTCTGGTCGAAAGTTCTATAAACCTCAAGCTCTTCTATCGCAAAGCAAAAAGAAGAAGGGGCCAAGTGGTGTCAGTGTT
ACAACAATTATAGTATGCATCCTAATTGTTGTTGTGATGGTGTTTCCCTGTATTCTACATACGGATACTGGTTTTGGAGATTCAAGCATTCAGGGCACGG
TAGCGGCTGTTGACTATTCCGGTCACGGACTTCATGGAGATAGCGGGGTAGCTGCCTGACGATCGCAATTCCGCCTTTCTCCTTCTCTATCTTCCTATTA
GTACATTGTTGCTATTTCCAGACTATTTGGTCTTGTCTTGTTTCGAAACTACTGTAGTATTGCTCATGACTTAGTGATACCCGAGGTCGAGCTTGTACTT
TCCGCTTTGTTTTGGTGTGACTTAACATCTTTTATTGGATTTCAGTTGAAAAATGGTTTAA