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Detailed information on CNT30503447


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006943, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639555Nicotiana attenuataNymphaea colorata68.0266.6397.011138reverse complement
CNT30536068Nicotiana attenuataEucalyptus grandis67.8432.9696.211135forward
CNT30513456Nicotiana attenuataJuglans regia68.0235.8597.11138reverse complement
CNT30500477Nicotiana attenuataCoffea canephora64.3259.0999.071076reverse complement
CNT30269781Nicotiana attenuataChenopodium quinoa67.6638.3195.941132reverse complement
CNT30730610Nicotiana attenuataCorchorus capsularis60.7395.5897.151016reverse complement
CNT30630109Nicotiana attenuataVigna unguiculata68.536.3696.421146reverse complement
CNT30196858Nicotiana attenuataPisum sativum67.7261.0195.231133reverse complement
CNT3090649Nicotiana attenuataSolanum tuberosum67.641.3799.731131reverse complement
CNT30193801Nicotiana attenuataSecale cereale68.2680.8895.181142reverse complement
CNT30291213Nicotiana attenuataTriticum aestivum68.232.8495.181141reverse complement
CNT30511396Nicotiana attenuataSolanum lycopersicum36.166.0195.7604reverse complement
CNT30460907Nicotiana attenuataSaccharum spontaneum68.2634.2795.531142reverse complement
CNT3017045Nicotiana attenuataZea mays68.2642.3694.481142forward
CNT30655263Nicotiana attenuataRosa chinensis67.6662.7194.431132reverse complement
CNT30206293Nicotiana attenuataHelianthus annuus65.5749.93991097reverse complement
CNT30689042Nicotiana attenuataTriticum urartu68.2639.6395.531142reverse complement
CNT30596725Nicotiana attenuataOryza meridionalis68.2633.0995.451142reverse complement
CNT30154922Nicotiana attenuataPrunus persica67.7267.0894.261133forward
CNT30410854Nicotiana attenuataPapaver somniferum67.4855.5398.051129reverse complement
CNT30319706Nicotiana attenuataAsparagus officinalis67.7239.4297.791133reverse complement
CNT30103033Nicotiana attenuataOryza rufipogon66.8372.0894.011118forward
CNT3039583Nicotiana attenuataMarchantia polymorpha14.5860.2594.26244forward

Expression of CNT30503447

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLLGSEHKLVMLSATGLSPSRVQHSGCFA*

>peptide 2 (29 aa)
MDRSPRFGSISSDNCPMKTRFRYGSGGFP*

>peptide 3 (29 aa)
MLLGSEHKLVMLSATGLSPSRVQHSGCFA*

>peptide 4 (39 aa)
MDSAAVRKVALFGNLRIYAYFQLPEAFRRLLRPSSSLGA*

>peptide 5 (37 aa)
SSSAQERSISELLRTLSRVAASRQTSWLSLHPYLLYH*

>peptide 6 (61 aa)
MSRRLILQQARGQSPGSSHCLGAYGFMFYFTPRWGFFSPFPHGTTSLSVTQEYLALQGGPC*

>peptide 7 (46 aa)
HLRRKSARSVSYYALFQGWLLLGKPPGCLCTPTSFITERSFRGLSW*

>peptide 8 (54 aa)
MFQFARLSLACPWIQQQFERLPYSGISGSMLIFNSPKHFVDYYALPRLWVPRSI*

>peptide 9 (54 aa)
MSSQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKLHPGHG*

>peptide 10 (55 aa)
MFQFARLSLACPWIQQQFERLPYSGISGSMLIFNSPKHFVDYYALPRLWVPRYPP*

>peptide 11 (39 aa)
MDSAAVRKVALFGNLRIYAYFQLPEAFRRLLRPSSSLGA*

>peptide 12 (44 aa)
MGVLFTLPSRYYFAIGHPGVFSLARWSLLIHTGFHVPHATRVRA*

Sequence

>CNT30503447
TCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACC
TCCTTTATCACTGAGCGATCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCGACGATGAAGCTTATCCCCCATCGTCTCACTAGCCGACC
TTGACCCCTGTTATTTTGAGGTCATATCTAGTATTCAGAGTTTGCCTCGATTTGGTACCGCTCTCGCGGCCCGCACCGAAACAGTGCTTTACCCCTAGAT
GTCCAGTCAACTGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGATTCT
TCAACATCAGTCGGTTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAATTGC
CCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGGTTCCCTTAACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAG
CCCTGGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTA
TCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCGGGTCAGAGCATAAGCTAGTGA
TGCTTTCGGCTACTGGACTTTCGCCATCTAGGGTGCAGCATTCGGGCTGCTTCGCCTAGCAGCACGACGCTTGTATTGCTCTCCCACAACCCCGTTTTCA
CGGTTTAGGCTGCTCCCATTTCGCTCGCCGCTACTACGGGAATCGCTTTTGCTTTCTTTTCCTCTGGCTACTAAGATGTTTCAGTTCGCCAGGTTGTCTC
TTGCCTGCCCATGGATTCAGCAGCAGTTCGAAAGGTTGCCCTATTCGGGAATCTCCGGATCTATGCTTATTTTCAACTCCCCGAAGCATTTCGTCGATTA
CTACGCCCTTCCTCGTCTCTGGGTGCCTAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCGGGT
CAGAGCATAAGCTAGTGATGCTTTCGGCTACTGGACTTTCGCCATCTAGGGTGCAGCATTCGGGCTGCTTCGCCTAGCAGCACGACGCTTGTATTGCTCT
CCCACAACCCCGTTTTCACGGTTTAGGCTGCTCCCATTTCGCTCGCCGCTACTACGGGAATCGCTTTTGCTTTCTTTTCCTCTGGCTACTAAGATGTTTC
AGTTCGCCAGGTTGTCTCTTGCCTGCCCATGGATTCAGCAGCAGTTCGAAAGGTTGCCCTATTCGGGAATCTCCGGATCTATGCTTATTTTCAACTCCCC
GAAGCATTTCGTCGATTACTACGCCCTTCCTCGTCTCTGGGTGCCTAGGTATCCACCGTAAGCCTTTCCTCGTTTGAACCTCGCCCTTCACTTTTAAGGC
TATGCCATCCTAAGGTGCTGCTAAATGGATGGATCTTATCAACGTCCATGAATGATAAATCATAGATCGAACC