Detailed information on CNT3050332


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315343Cucumis sativusCorylus avellana22.6225.0684.11107forward
CNT30516813Cucumis sativusJuglans regia25.167.7685.71119forward
CNT30729814Cucumis sativusCorchorus capsularis22.6213.183.18107forward
CNT30505263Cucumis sativusNicotiana attenuata27.4816.9180.77130forward
CNT3043425Cucumis sativusPrunus dulcis29.8122.9385.82141forward
CNT30170825Cucumis sativusPistacia vera23.6815.4583.04112forward
CNT30598132Cucumis sativusFraxinus excelsior23.6817.8982.14112forward
CNT30111654Cucumis sativusFicus carica24.9517.8883.9118forward
CNT30723681Cucumis sativusLupinus angustifolius20.9314.284.8599forward

Expression of CNT3050332

Peptides detected in this lncRNA

>peptide 1 (71 aa)
PNSSKSEFSIAMNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYLWQAKA*

Sequence

>CNT3050332
CCCTAATTCAAGCAAAAGCGAGTTTTCTATAGCCATGAATTGGATACAAAGGAAGATCTACCTTTATAATGTCACATTTGGGTTGTACATGTTGGATTGG
TGGGAGCGTATCCTCTTCAATACAATGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGGTCACGATACGTGAATGATATGTGCAAGAGGTATCTGT
GGCAAGCCAAGGCGTAGGAGAAGTCAATTTGGATGCAATTTTGCATTCTTATCAATCTTGTAAAGAGATGTCATGTACTTTGAGAATGGTGTAGTTTTCC
CTTTTTGCTTTTAGATGAGCTTCTCTGTTTCTTGAATTTATAGAACAAACTTTGTATTACACTTAAGATCTGTATTGAAACTGATTTTCATATTCAAATG
AAATGCTCTGATGAGTTATTAGAGTGTAAATGTTGTTGTTCTTGGTGAATTAGAATGCGGTCAGATTTAAGTA