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Detailed information on CNT30503289


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40158|MT2B_SOLLC, E-value = 8e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3073023Nicotiana attenuataQuercus suber5.3324.3492.3165reverse complement
CNT3095955Nicotiana attenuataSolanum tuberosum15.4221.8692.55188forward
CNT3036674Nicotiana attenuataCucumis melo5.2523.3687.564forward

Expression of CNT30503289

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MGLIEATKSMLDSPIYPKKSSSMHKTSRIRIG*

>peptide 2 (48 aa)
MSRLWCFRCSSNLGNSCTCQPKFNTNTKIMKFFYHKTTQHTQCESGEG*

>peptide 3 (40 aa)
MTRTRDLYITRELTSNPAISQSRSYHFPTNTILQEKFPSA*

Sequence

>CNT30503289
TAAAAGGCTAACGTCCATCCATCTCTGCTTAATTAAGATTTAATTTGTTCACTTAGAACAAGTGCAAGGGTTACACTTGCAGTCAGATCCACATTTGCAG
CCATTCTCAGCAACAGGGGATTCACCCATTTCCATTGTGCCGAAGCTTGTCTTCTCAGGTCCCACCCCAAGCACCAATGTCTCGGTTGTGGTGCTTTCGT
TGTAGCTCAAATCTGGGTAATTCTTGCACCTGCCAACCAAAATTCAACACAAACACAAAAATTATGAAATTTTTCTACCACAAAACAACACAACATACGC
AGTGTGAATCTGGGGAAGGTTAGTGTGTACGCAGACCTTACCCTTACCTTTATCGGGTACAGAGGCTGTTTCTAGTAGAGTGTACACAAATCTTACCCTA
CCCGTTGGGAGTAGAGAGGTTGTTTCTGGGTGCCCCTCAGCTTTTTTTTACCACAAAACACACTCATAAAAATTTTGCAAAACAAATACCCAACACAAAC
ATATACACAAATCAAGAACCTAAAGTCAAGCAAGTTTAGAATGGATGTGAACTTGTTATATGCACAGTCTTCTTTTTTTTTTTTTTTGGCATGTAAACAG
AGTTTGAGCAAAAAATAATGGGTTTAATTGAAGCCACAAAATCCATGCTAGATTCGCCTATTTACCCAAAAAAGAGCAGTTCGATGCACAAGACATCTCG
CATTCGCATAGGATAGAACATGAGGAAGGGTCGCGCAACCCCAAGGGGTGTGACATAGACAGCATAGCCTAATGGTTCGTGACTCGTGACTGTTTCCATG
ACTCGAACCCGTGACCTATACATCACACGAGAACTTACTAGTAACCCCGCAATTTCCCAATCGAGATCGTATCATTTCCCAACAAATACAATCTTACAAG
AAAAATTCCCATCTGCCTAAGTTTAGACTTTGGTGACACCTGTATTGATAGAAGGTCGCAGATATCCCGCAAAATTAATTAATAAAGGTGCATGCCTAAA
CACCACCGTCATTAAAAAAAAAAATCAGTTGATACAGCAAAACTGTATGTTAATAAAAATAACATAAAATAGCAACAAATTCTGTATCAATTGATTGAGG
GAAAAAGAAGGAATACCCGCCACAGCCGTTGCCGCACTTGCAGCCAGATCCACAACCACAGCTTCCTCCACAGCAAGACATTTTCAAAAACGAGAAAGTG
TTTTGCTGATAAGAAACAT