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Detailed information on CNT30503251


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 8e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317005Nicotiana attenuataCorylus avellana7.0121.7991.861forward
CNT30269818Nicotiana attenuataChenopodium quinoa12.8732.6585.71112forward
CNT30380061Nicotiana attenuataManihot esculenta20.3446.9583.62177forward
CNT30630708Nicotiana attenuataVigna unguiculata23.9180.9381.25208forward
CNT30712704Nicotiana attenuataGlycine max25.5260.9981.53222forward
CNT30544306Nicotiana attenuataBrassica napus10.2325.588.7689forward
CNT3061832Nicotiana attenuataArabidopsis lyrata19.3154.7283.93168forward
CNT30216944Nicotiana attenuataKalanchoe fedtschenkoi26.5532.8183.98231forward
CNT30210280Nicotiana attenuataHelianthus annuus20.9220.7582.97182forward
CNT30479805Nicotiana attenuataArabidopsis halleri27.4778.6281.17239forward

Expression of CNT30503251

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MDHLGVACPPNPTCQYNLLDQQPNKLSVYDIVMLQPKPRIG*

>peptide 2 (60 aa)
EERRYMIRILKNECGQYWSSMKLSTVCLELQAALIKCIKMYSILLNCRITEWGLFQHFQQ*

>peptide 3 (58 aa)
MKKPSIANMASLPFLISFTFNIAAWSGSFARPRGSNGPPGCSLSSKSYMPIQFIRSTA*

>peptide 4 (82 aa)
MILLCCNQSLALVDERKRKLHIRCMTTLNEYDWQRTQDLKVAGALLDSTKIYFIYRVPTTNVSLFSKDITCIHRIFAELYVC*

>peptide 5 (50 aa)
MYHYFLKTLHVYIEFLLNFTCASDPSLYNIRPPMGMRPFGEKSTSFAQSG*

Sequence

>CNT30503251
TGAGGAACGACGTTATATGATTAGAATATTGAAGAACGAATGTGGCCAGTACTGGAGCTCTATGAAATTAAGTACAGTTTGTCTTGAACTACAAGCTGCT
CTGATCAAGTGCATCAAAATGTATAGCATATTGCTGAATTGTAGAATTACAGAGTGGGGGCTCTTTCAGCATTTCCAGCAATGACAGTGAGCAAGTTGTT
GCCAAAGGGGTCACTCAAATGGGCAGCCAAATTCTCAACTGGACCTTTTCCTGTCACATAGGCTTGGATGAAGAAACCAAGCATAGCAAACATGGCTAGT
CTTCCATTCTTGATTTCTTTTACTTTCAATATTGCTGCCTGGTCTGGGTCCTTTGCTAGGCCTAGGGGATCAAATGGACCACCTGGGTGTAGCTTGTCCT
CCAAATCCTACATGCCAATACAATTTATTAGATCAACAGCCTAATAAATTATCAGTATATGATATTGTTATGTTGCAACCAAAGCCTCGCATTGGTTGAT
GAAAGGAAAAGGAAGCTACATATAAGGTGTATGACTACTCTTAATGAGTATGACTGGCAGCGGACCCAGGATTTGAAGGTCGCGGGTGCACTTTTGGATT
CAACCAAAATCTACTTTATATATAGGGTGCCAACTACTAATGTATCACTATTTTCTAAAGACATTACATGTATACATAGAATTTTTGCTGAACTTTACGT
GTGCTAGTGACCCCTCTTTGTATAACATACGTCCGCCTATGGGTATGAGGCCTTTTGGAGAAAAAAGTACTAGCTTTGCCCAAAGCGGATAATGCCACAT
CATATTAAGAGTATGTTTGAGCTATGTAACGCCAACATTAATGTCGCAAACTAGTCACCAAGAAGTGAAG