« Back to Nicotiana attenuata search


Detailed information on CNT30502479


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CD53|NU2C2_SPIOL, E-value = 2e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30488794Nicotiana attenuataOlea europaea14.2954.3888.98118reverse complement
CNT3059312Nicotiana attenuataArabidopsis lyrata14.2921.5387.29118reverse complement
CNT30623007Nicotiana attenuataDaucus carota14.2925.3288.14118reverse complement

Expression of CNT30502479

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MIWHVHNKNIIFDSTRIFMKAFHLLLFDKSLIFSQCIQIKPDICRIFESVLFQLPEAYLTSFLVFGPGFNALYSVNPSLYASP

>peptide 2 (32 aa)
EETEMIMNPPLLFNSSFCHQQPIGKKRPHISQ*

>peptide 3 (36 aa)
MPLPWFPMDISPVNEMWNVLYTIWLVVSFNYQLLCG*

>peptide 4 (40 aa)
MACCKFQLPTPLWLIFKWNVVYRALLYAPRANYLSIVFCP*

Sequence

>CNT30502479
GAAGAAACAGAAATGATAATGAACCCACCCCTTCTCTTCAATTCCTCTTTTTGCCACCAACAACCAATTGGTAAGAAACGACCCCATATTTCTCAGTGAC
TCATAATTCCAAATTGCTGCCACATTATATATTTCATTCTTTCTGAAGCAAACTCTGTTAGCTTTGGGCAGTATATCATCTCATTAATCTACCATCTTAT
TATACATGTATGTGATGATCATATAAACCAAATGTCTAAGAAAATTGAGCACTTTCATTGAAGTTATTGGCTTCCCCGCTGAGCTCTTGTCTTATGCCGC
TGCCTTGGTTCCCAATGGATATATCACCAGTAAATGAGATGTGGAATGTCTTGTACACTATATGGCTTGTTGTAAGTTTCAATTACCAACTCCTTTGTGG
TTAATTTTCAAATGGAATGTAGTGTATCGGGCATTATTATATGCTCCTAGAGCAAACTACTTAAGTATTGTTTTCTGCCCATAGACATAGGAATTATAAT
ACACAATTGATTACTTGACTCAGGTTCTTCTTATTGATGACTCTTGCTTACTATTGATACCAAAAAAATTGAATCCATGATCTGGCATGTACATAATAAA
AACATCATTTTCGATTCAACTAGAATTTTTATGAAAGCGTTTCATTTGCTTCTCTTCGATAAAAGTTTGATTTTCTCGCAATGTATCCAAATTAAACCTG
ATATCTGCAGAATCTTTGAATCTGTGCTTTTTCAACTCCCTGAAGCATATCTTACGTCCTTTCTTGTCTTTGGTCCTGGTTTTAATGCTCTATATTCTGT
TAATCCTTCTCTTTATGCTTCACCAG