Detailed information on CNT30502302


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30355674Nicotiana attenuataLactuca sativa11.9720.0581.76148reverse complement

Expression of CNT30502302

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLLLYTYGLYEERGFGALLMEYRWFCTLEE*

>peptide 2 (33 aa)
MPSTVKETMFSWTFRRGRRHRVWDAAPLYLWTV*

>peptide 3 (33 aa)
MVEYNRVKVKCLIEFTRGFLRMYGQTSVIDSKK*

>peptide 4 (40 aa)
LYTRRKEQKSFFTLLLMLFQPFLVSLYSAFSEDKLKSIKS*

>peptide 5 (44 aa)
MESTRGEVHWDLKFWNNLRKTGRSKHMIVKMYGDGVRGRTVSFM*

>peptide 6 (56 aa)
IYPPERTEELFHPLANALPTIPRFLIFGVLRRQIKINKELKLEKRNLKQTGRNANG*

>peptide 7 (60 aa)
MEMGYGGERCLLCKSYYEKFMTTEESRKVYVFTWLVACGVILRAENLGKKKFICWLALHV*

Sequence

>CNT30502302
TTATATACCCGCCGGAAAGAACAGAAGAGCTTTTTCACCCTCTTGCTAATGCTCTTCCAACCATTCCTCGTTTCCTTATATTCGGCGTTCTCAGAAGACA
AATTAAAATCAATAAAGAGCTAAAATTAGAAAAAAGAAATTTAAAGCAAACTGGAAGGAATGCAAACGGTTGAGTTTAGTGTCATAAAATAGGGTGCCTC
AAACAAGGAGAACCTCTGTTTTGCTAATTTATTGCAGGAAGGATCAGTTGGACACAATGGTCGAATACAACAGAGTGAAGGTCAAGTGTTTGATTGAATT
TACTAGAGGGTTTTTGCGTATGTATGGTCAAACATCTGTTATTGATTCAAAGAAATGATCAAAAGATCTTTATTTGCCGGAGAAGTGGGCGTTTCCAATG
ATAATGCATGGCTACTTAACAGGGGGAATTAACCGCAAATACTAGTTTATCTCATTATTGTTGATAAAATGGCCTAGTCCTTCACATCTACCGCGCATTG
TGCTCCAAAAGGTACTAAGAGAGGCGGCGGTGAAACTCAAACTCGAATCCTCTGCCTAAGTTGGTGCCATCCGGAAAGAGAACATGTTGAATTGTGTGAA
CTACCTTATCTGAAAGCTCAAGTTTAGAGATATAACATAGTTATTTATTTATGTCTGCAACCTGATCCATAGGATATGGAGTCTACAAGGGGAGAAGTAC
ATTGGGATTTGAAGTTTTGGAACAACTTGCGCAAGACTGGAAGGTCGAAGCACATGATAGTCAAGATGTATGGAGATGGGGTACGGGGGAGAACGGTGTC
TTTTATGTAAGTCCTATTATGAGAAGTTTATGACTACGGAGGAATCGAGAAAGGTGTATGTTTTCACTTGGCTAGTTGCGTGTGGGGTAATCTTGAGGGC
GGAGAACTTGGGGAAGAAGAAGTTTATTTGTTGGTTGGCGCTTCATGTGTAAAGACTCAGGGAAAGATGTGAATCACTTCCATTTACTTTGTCGAATAGC
GTCTTAGTTGTGGTGGGAAATCCTGTGATGGTCTGGACCAGAGTGAGTAATGCCGAGCACTGTGAAAGAAACAATGTTTAGTTGGACATTTAGAAGAGGG
AGGAGACACAGGGTATGGGATGCTGCTCCTCTATACTTATGGACTGTATGAAGAGAGAGGATTTGGAGCGCTTTTGATGGAGTATAGATGGTTTTGTACA
CTTGAGGAATAACCTTCTATCTCTTATTCCTTTTTG