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Detailed information on CNT3050211


BLAST search results

BLAST vs Swiss-Prot:
sp|P48350|CATA1_CUCPE, E-value = 8e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640190Cucumis sativusNymphaea colorata48.421.1481.87182forward
CNT30516669Cucumis sativusJuglans regia94.6838.4484.55356forward
CNT30501026Cucumis sativusCoffea canephora52.3912.981.22197forward
CNT30616919Cucumis sativusSesamum indicum41.4948.383.33156forward
CNT30282683Cucumis sativusChenopodium quinoa94.1538.4481.36354forward
CNT3021611Cucumis sativusCitrullus lanatus93.3588.4194.02351forward
CNT3070085Cucumis sativusQuercus suber25.2714.5789.4795forward
CNT30381388Cucumis sativusManihot esculenta57.9837.3978.44218forward
CNT30526368Cucumis sativusPhaseolus vulgaris46.8111.0683.52176forward
CNT30708847Cucumis sativusGlycine max48.9419.1583.7184forward
CNT3046375Cucumis sativusPrunus dulcis96.5452.0184.85363forward
CNT30168584Cucumis sativusPistacia vera55.8577.4980.48210forward
CNT30638211Cucumis sativusCapsicum annuum58.2439.2584.93219forward
CNT3098566Cucumis sativusSolanum tuberosum29.2632.3586.36110forward
CNT30305192Cucumis sativusTriticum aestivum31.1221.5986.32117forward
CNT30563752Cucumis sativusActinidia chinensis58.7845.3888.69221forward
CNT3085325Cucumis sativusVigna radiata83.5144.4184.08314forward
CNT30552704Cucumis sativusOryza glaberrima17.2922.4186.1565forward
CNT30668803Cucumis sativusTriticum dicoccoides5024.4582.98188forward
CNT30313019Cucumis sativusCamelina sativa43.0926.4780.86162forward
CNT3080335Cucumis sativusBrassica juncea44.1529.2881.33166forward
CNT30260467Cucumis sativusBrassica rapa35.6432.1385.82134forward
CNT30475173Cucumis sativusSaccharum spontaneum90.6945.980.06341forward
CNT30654455Cucumis sativusRosa chinensis46.8138.5185.23176forward
CNT30715065Cucumis sativusMalus domestica golden96.5425.5383.75363forward
CNT30624536Cucumis sativusDaucus carota97.8726.1980.43368forward
CNT30478285Cucumis sativusArabidopsis halleri55.0559.8379.23207forward
CNT30370393Cucumis sativusOryza glumipatula29.7947.6685.71112forward
CNT30154060Cucumis sativusPrunus persica77.6629.0884.25292forward
CNT30574555Cucumis sativusVitis vinifera20.489.3189.6177forward
CNT30704833Cucumis sativusPrunus avium96.5450.8484.02363forward
CNT3022395Cucumis sativusPopulus trichocarpa80.3273.4882.78302forward
CNT3038372Cucumis sativusCucumis melo95.4832.6496.66359forward
CNT30576697Cucumis sativusOryza barthii38.0332.9584.62143forward

Expression of CNT3050211

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MAGQKANCSFSAKKLSMFLFKTKRPTGCKGKISSGQVLVTSRGSKSYLSS*

>peptide 2 (32 aa)
RCINWELEIVWSKTIPLSICIGEYPSLKQFVI*

Sequence

>CNT3050211
TAGGTGCATTAACTGGGAGTTGGAGATAGTTTGGTCCAAGACGATACCTCTGAGTATCTGCATAGGAGAATATCCTAGTTTGAAGCAATTTGTCATCTGA
ATAGTAGATTCCAGGTACTATAATGGCAGGACAAAAGGCCAATTGTTCATTCTCTGCAAAGAAGTTATCAATGTTCTTATTCAAAACCAAGCGGCCAACT
GGCTGCAAGGGCAAGATATCCTCGGGCCAAGTCTTGGTTACATCTAGAGGGTCAAAGTCATATCTATCTTCATGATCAGGGTCAATAGTTTGAATGAAAA
GCTTCCACTCAGGGTAGTTGCCAGCCGCAATTGAATCGTAGAGGTCCTGAGTGGCATGGCTGTGATTACTTCCTCC