Detailed information on CNT30501327


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT004661, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30357533Coffea canephoraLactuca sativa31.9141.2698.57420forward

Expression of CNT30501327

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MGHVESRVNQQGPPCKAKYSWVTDSEVVP*

>peptide 2 (36 aa)
YIIIRFLLVSYCDYRGSRTDHRTLFNKWNTLAVRVG*

>peptide 3 (37 aa)
MVKSVGGPERRWFTLRRMSAVRVRLSPTRELSRYKAI*

>peptide 4 (30 aa)
MIAPNFSDSAVRSMIYHSWTLIRSIHLAAP*

>peptide 5 (51 aa)
MDVDKIHPFSSTLGWHSLKIKVKGEVQTRKGLRWIPRHKRGCGGAIQVSCC*

>peptide 6 (39 aa)
MPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGRESGLKS

Sequence

>CNT30501327
TTATATAATAATAAGGTTTTTGCTAGTCTCCTATTGTGATTACCGGGGGTCACGGACCGACCATAGAACCCTGTTCAATAAGTGGAACACATTAGCTGTC
CGCGTTGGGTAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCGTTCTTAAGACCGACCAAAGAGTCGGGCGGAAGGGGGGGGGAAAGCT
CTCCGTTCCTGGTTCTCCTGTAGCTGGATCCTCCGGAACCACAAGAATCCTTAGTTAGAATGGGATTCCAACTCAGCACAGCACCTTTTGAATGAGATTT
TGAGAAGAGTTGCTCTTTGGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAAAATCAGT
CGGGGGGCCCGAGAGGCGGTGGTTTACCCTGCGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAACTCGTGAACTTAGCCGATACAAAGCTATATGA
TAGCACCCAATTTTTCCGATTCGGCGGTTCGATCTATGATCTATCATTCATGGACGTTGATAAGATCCATCCATTTAGCAGCACCTTAGGATGGCATAGC
CTTAAAATAAAAGTGAAGGGCGAGGTTCAAACGAGGAAAGGCTTACGGTGGATACCTAGGCACAAAAGGGGGTGTGGGGGAGCAATACAAGTGTCGTGCT
GCTAGGCGAAGCAGCCCGAATGCTGCACCCTAGATGGCGAAAGTCCAGTAGCCGAAAGCATCACTAGCTTACGCTCTGACCCGAGTAGCATGGGGCACGT
GGAATCCCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTCCTGGGTGACCGATAGCGAAGTAGTACCGTGAGGGAAGGGTGAAAAGAACCCC
CATCGGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCAGGGCTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTC
ATAGGCAGTGGCTTGGTTAAGGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCT
ATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCA
CTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCCGCGAGA
GCGGTCTCAAATCGGG