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Detailed information on CNT30501325


BLAST search results

BLAST vs Swiss-Prot:
sp|P31839|NU1M_OENBE, E-value = 4e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374070Coffea canephoraArabidopsis thaliana14.3910096.1333forward
CNT30618776Coffea canephoraSesamum indicum51.9458.2191.931202forward
CNT3021612Coffea canephoraCitrullus lanatus4.1947.7894.8597reverse complement
CNT30401845Coffea canephoraBeta vulgaris12.3641.6383.92286forward
CNT30255597Coffea canephoraAvena sativa9.1224.1790.52211reverse complement
CNT30605041Coffea canephoraGossypium raimondii14.8236.7693343forward
CNT30231730Coffea canephoraAnanas comosus7.0958.9990.85164forward
CNT30655384Coffea canephoraRosa chinensis21.6160.7592.8500reverse complement
CNT30627396Coffea canephoraDaucus carota18.5101.992.29428forward
CNT30679583Coffea canephoraTriticum urartu29.1714.4893.63675forward
CNT3035046Coffea canephoraCucumis melo39.535.390.81914reverse complement
CNT30104494Coffea canephoraOryza rufipogon7.958085.87184reverse complement

Expression of CNT30501325

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MQKGGLVIYSYARSFFKPFGMYCPLTIDQIHQTRNEIPHCC*

>peptide 2 (87 aa)
MQVLRVLSLPTSRHHLVGSCRYQQRERNNQMETATNYGSWPRQRPRRRGDRSKREGLDDVFIHSWAAVSRSRGRSAPCPRIRVIYSL*

>peptide 3 (30 aa)
MGPFLEKLRISIRVEDGATSNPVTLLRMES*

>peptide 4 (39 aa)
MSPSPVSPHLCRVYRSTPAAQTHFGPMDPSIIGDRTAAP*

Sequence

>CNT30501325
TAAGAATCTTACCTTTACTTAGAGAGGGGCAGCGGTACCACGCTCTTCCGTGCTCGTAGGTTGACTCCCCTATGCATCCCGACTAAGGTCTCATCTCACA
AAGGTGCACTTCCCTTATGCATCCAGCCGCTTCACTAATGTGAATAGGTTATGCAGAAGGGTGGGTTGGTTATATACTCTTATGCGCGTTCCTTCTTCAA
ACCTTTTGGTATGTATTGCCCCCTAACTATAGATCAGATCCACCAGACGAGAAACGAAATTCCGCACTGCTGCTGAGTCGTCGGACTTATCCACCAAGGG
ATTCGTGGAATTTCTGTGGATTGCGTTGGAGGAAATCTACCAAAGCTAGGCAGATAGATAGACTCCTTTCCCGCTGCTAAGGGAAAGCAAGAAAGAAAAG
AAAATGATTGTTTTTTAACCAGCGCCCCCCTTTTGGGTATGCAGGTACTAAGAGTCCTCTCACTACCAACCAGCAGACATCATCTGGTTGGGTCTTGCCG
GTATCAACAACGAGAAAGAAACAACCAAATGGAAACAGCAACTAACTATGGCTCTTGGCCCAGACAACGTCCTAGGCGTAGGGGAGATCGGAGCAAGAGG
GAAGGCCTAGACGACGTTTTTATTCATTCCTGGGCTGCAGTAAGTAGATCGAGAGGTCGTTCCGCCCCTTGTCCCCGAATTAGGGTAATATATTCTCTTT
GAATCTTGCTCCAATCTGACCTAGCTGGCGAGCAATCCCAGTTCGCGACAGAGAACAAGACAGCAAGCGAGCGTACCTTTGTTCGCTTCTTCTCCACCAA
GCACGGAAGTTTAAGGATAACTGTAGGTCGGTGGTTACCTAAGGAAACTCCGATTCGATCCGCCCCCCGGCCGGGAGGCATCTATCTCATCCCGATCACA
AGGAGAGGTTCACTATGATGGGGGGTACTTTTTTTTTCCCTTTCGGATAAAATGAAATGCATAGGGGACCATCCTTTTGTTGCGGCATGCTCCTCAGATT
TACGGATTCGAAGGGGGCCTCAGGCCCTACTTAGTTGACTGACAATGACAAAGGCTTGCGAAACCTAAGTAGGGCCTTTTCCTTTTTGTTTGAATAACCC
ATTCTCATTATCTTTCATAAGTCAAGTAGGCAAACCTATAAGGTCCTTAGTAGCGTTGACAAAGAAGAAAAGCCGGTTAAAAGCGAATCTTTTTATTTAT
ATTATATCTTTTTTTGAATTATATTATAGGCCAGCTTGACAAGCAACCCTTCCTCTTGATCTGAGGTGCGAAGAGAAAGATCTCTTTTTTATGACTTCCC
CGGCCCAGAAAAGTGACCGACCAGGGCCCTATTGATGAATGAAAGAAAGGGTTTATGAGCCCTAGCCCTGTAAGCCCACACCTGTGTAGAGTATATCGTT
CAACACCTGCGGCACAAACCCATTTTGGACCTATGGATCCTAGTATCATAGGCGACCGAACGGCCGCCCCCTAATTACTAGACCAACCTGCTATAATAAT
TCCATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGGATCTGACAATACCATACCATAATCAAAAGGTACAACGGCCCAAGCG
ACCAGACTTAACATAAATGTAGTCACTGGAGCCATTCTAAAAAGGGAGAAATTAGCACTACTTGGTGAAATAGGTTCTTTTAGAATCAATTTCAAACCAT
CTGCTAGAGGTTGTAACAATCCAAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAAAAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGC
TACTCCTAGTAGAAGTGGTAGAATTATTCCAAGTATTTCAGCTGGAACAGCTATGTACATTTTCGATTTTCTATTCACTCATGATCTGGCCTGGTCGACC
CAATCATGATATTGAAGGATGGGACCTTTTCTCGAAAAACTCCGGATCTCGATAAGAGTTGAAGATGGTGCAACATCGAATCCTGTTACCTTACTTCGAA
TGGAATCTTAGCCCGCCTCACTTTCTTTACTACATAAGGACATAAGCGAAGTCAAGGGATTTCCGTCTAACTAGTGGCTGAGAGTAAGCAAGCTACCTTC
ATTCAACAGATTTGTGGTTGAGTCAATAACATGCCCTAGGTCGGGAATCTTTGCTCTTTTCTTTTGCATTTCCGCTGCCTAGACTGCATTTCGGGAGTTT
GAACACCATCCCATTTCAACCAAAAATACAACCCTGTCAAAGACCTTAACGGCCTTCCTTCTTTATGAGTGGAAATCCAATCCCGTTTTGTCTTTTTTTT
TTGCATAAAAAGCA