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Detailed information on CNT30501026


BLAST search results

BLAST vs Swiss-Prot:
sp|P17598|CATA1_GOSHI, E-value = 6e-163

BLAST vs NONCODE:
NONGMAT000677, E-value = 9e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640190Coffea canephoraNymphaea colorata15.3227.1879.49234forward
CNT30516671Coffea canephoraJuglans regia18.5360.4782.69283forward
CNT30373064Coffea canephoraArabidopsis thaliana10.8128.983.64165forward
CNT30616919Coffea canephoraSesamum indicum12.3858.5180.42189forward
CNT30282683Coffea canephoraChenopodium quinoa15.6525.9587.03239forward
CNT3021611Coffea canephoraCitrullus lanatus14.0153.981.78214forward
CNT3070085Coffea canephoraQuercus suber17.4240.880.08266forward
CNT30380803Coffea canephoraManihot esculenta7.8625.5986.67120forward
CNT30405510Coffea canephoraBeta vulgaris12.314085.64188forward
CNT30708912Coffea canephoraGlycine max13.692483.25209forward
CNT3046375Coffea canephoraPrunus dulcis18.0739.5484.06276forward
CNT30168584Coffea canephoraPistacia vera5.4430.6387.9583forward
CNT30638517Coffea canephoraCapsicum annuum39.3694.580.03601forward
CNT3098188Coffea canephoraSolanum tuberosum12.5738.7182.29192forward
CNT30567580Coffea canephoraActinidia chinensis22.1367.681.66338forward
CNT3085325Coffea canephoraVigna radiata16.6335.9382.28254forward
CNT30542456Coffea canephoraBrassica napus18.0163.6679.27275forward
CNT30313019Coffea canephoraCamelina sativa10.6126.4784.57162forward
CNT3080335Coffea canephoraBrassica juncea11.7931.7582.22180forward
CNT30263082Coffea canephoraBrassica rapa18.0782.3982.61276forward
CNT30475173Coffea canephoraSaccharum spontaneum15.3931.6381.28235forward
CNT30654455Coffea canephoraRosa chinensis20.568.4980.83313forward
CNT30714909Coffea canephoraMalus domestica golden32.3593.7481.17494forward
CNT30625119Coffea canephoraDaucus carota9.333.7381.69142forward
CNT30478285Coffea canephoraArabidopsis halleri9.541.9182.07145forward
CNT30154060Coffea canephoraPrunus persica39.6960.3679.7606forward
CNT30574555Coffea canephoraVitis vinifera264881.11397forward
CNT30704833Coffea canephoraPrunus avium18.0738.6683.7276forward
CNT3022395Coffea canephoraPopulus trichocarpa13.9551.8287.32213forward
CNT3038372Coffea canephoraCucumis melo32.0944.5578.16490forward
CNT3050211Coffea canephoraCucumis sativus12.952.3981.22197forward

Expression of CNT30501026

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MQAARSQQRSCQYSCSIPTGPQVAKAKYLQVQQRQG*

>peptide 2 (30 aa)
MSFSSLVDQSVSMDAKAFHMPVILWNADII*

>peptide 3 (50 aa)
MQAARSQQSSCQYSCSIPTGPQVAKAKYLQARSCLHQADQNQTDLHDQDP*

>peptide 4 (39 aa)
PVHEVHETIMVIVVMSTLGSICWKLQIVRAKTVSLGISI*

>peptide 5 (65 aa)
MWVFGFGFRAWIESGNFIASRTKKTGVLFPTKSKLPYPDAQSNHQQLIKSFQENADQELNKTPTT*

>peptide 6 (64 aa)
MRFQKGKLPIFTTPKCAKCVVEGNKVRTTISRVLFTSICVEFENFNAMEYQRKASQWLAKWQKV*

>peptide 7 (79 aa)
MDKLHLATKSTCAFRRGSSQFLQRQSVLSVWWRATKLGQLLVVFYSHPYVLNLRTSMPWNTKGRLHNGWLSGKKYKLLD*

>peptide 8 (73 aa)
MIGEEIKDSPILLDVGLWIWFQSMDRIWEFHCITNKKDGGIVSHQIEITLSRCTKQPSAAYQEFPRKCRPRTK*

Sequence

>CNT30501026
CCCGGTGCATGAAGTTCATGAAACCATCATGGTGATTGTTGTGATGAGCACACTTGGGAGCATTTGCTGGAAGCTGCAGATAGTTCGGGCCAAGACGGTG
TCGCTGGGTATCAGCATATGAGAATATGCGAGTCTGGAGCAGCTTGTCATCTGAATAATATATTCCAGGTACAATAATAGCAGGGCAAAATGCAAGCTGC
TCGTTCTCAGCAAAGAAGTTGTCAATATTCTTGTTCAATACCAACCGGCCCACAGGTTGCAAAGGCAAAATATCTTCAGGTACAACAAAGGCAGGGTTAA
ATGCAAGCTGCTCGGTCTCAGCAAAGTAGTTGTCAATATTCTTGTTCAATACCAACCGGCCCACAGGTTGCAAAGGCAAAATATCTTCAGGCCAGATCTT
GCTTACATCAAGCGGATCAAAATCAAACCGATCTTCATGATCAGGATCCATAATCTGGATAAAAAGTCTCCACTCCGGATAGTTTCCAGCAGCAATTGAG
TCATAGAGATCCTGGGTAGCATGGCTATGATTTGATCCTCCAACCTTAATAGCTTCTTCCTCCAACAGGTTCTTCACTCCACAGGTTGGCTTCCAGTGGA
ACTTCACATAATGAGCTTTTCCAGCCTTGTCGATCAGAGTGTAAGCATGGACGCCAAAGCCTTCCATATGCCTGTAATCTTGTGGAATGCCGACATCATC
TAAGAAGAAAGCAAACGTAAGCAAGCTCTCAGGATGATAGGAGAAGAAATCAAGGATTCTCCAATACTCCTGGATGTGGGTCTTTGGATTTGGTTTCAGA
GCATGGATCGAATCTGGGAATTTCATTGCATCACGAACAAAAAAGACGGGGGTATTGTTTCCCACCAAATCGAAATTACCCTATCCAGATGCACAAAGCA
ACCATCAGCAGCTTATCAAGAGTTTCCAAGAAAATGCAGACCAAGAACTAAATAAAACACCAACCACATAATCCAAGTCCCCTGAGATCATCTATTGTCC
CCGGAAAGCTTATGTCCCTAGTTGTGGTGCTTACAAGTTAATTGAATGGATAAGCTGCATCTTGCTACTAAATCAACATGCGCTTTCAGAAGGGGAAGCT
CCCAATTTTTACAACGCCAAAGTGTGCTAAGTGTGTGGTGGAGGGCAACAAAGTTAGGACAACTATTAGTCGTGTTTTATTCACATCCATATGTGTTGAA
TTTGAGAACTTCAATGCCATGGAATACCAAAGGAAGGCTTCACAATGGTTGGCTAAGTGGCAAAAAGTATAAACTGCTAGACTGACACGTCCAATTCAGG
AGCTGTACATCATGCAAATTCAGCTCTTCAAAATTCTGTGATTGTCTCTAAGAACAACTCGTATCCATTACTTTGCAGATATGAGACAAAGAGGCTTGAC
ATGTTAACTAAACAACACATGTCAGTGGCTCTCTGCTGATTTAATTCTTAATATGTGCGCAGCATATGAATCCATCTAGTTGACTGACGGATTAGCAGAA
CTATTTTCTGAAGGAAAACAACAGAAC