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Detailed information on CNT30500730


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 1e-66

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Coffea canephoraSetaria viridis12.8539.585.59111forward
CNT30523536Coffea canephoraSetaria italica40.8662.4879.89353forward
CNT30536042Coffea canephoraEucalyptus grandis49.5477.8280.14428forward
CNT30549166Coffea canephoraIpomoea triloba58.5675.380.04506forward
CNT30376379Coffea canephoraArabidopsis thaliana57.8767.281.6500forward
CNT30727661Coffea canephoraCorchorus capsularis65.3990.2678.76565forward
CNT30379091Coffea canephoraManihot esculenta37.0454.2484.69320forward
CNT30524942Coffea canephoraPhaseolus vulgaris43.6356.1879.05377forward
CNT30628702Coffea canephoraVigna unguiculata45.3757.2380.36392forward
CNT30489004Coffea canephoraOlea europaea28.0139.4183.47242forward
CNT30506120Coffea canephoraNicotiana attenuata49.1972.6580.94425forward
CNT3042435Coffea canephoraPrunus dulcis51.6264.4582.06446forward
CNT3091701Coffea canephoraSolanum tuberosum71.4181.1882.5617forward
CNT30559890Coffea canephoraActinidia chinensis37.7347.7380.67326forward
CNT30591858Coffea canephoraMusa acuminata44.175.1580.58381forward
CNT3087851Coffea canephoraVigna radiata41.5539.2880.22359forward
CNT30235097Coffea canephoraBrassica oleracea51.9756.0581.96449forward
CNT30508722Coffea canephoraSolanum lycopersicum59.3810081.09513forward
CNT30554580Coffea canephoraOryza glaberrima29.0536.9181.27251forward
CNT30312432Coffea canephoraCamelina sativa44.3398.4681.98383forward
CNT30263629Coffea canephoraBrassica rapa43.465.4582.4375forward
CNT30468525Coffea canephoraSaccharum spontaneum32.5233.3380.07281forward
CNT3017802Coffea canephoraZea mays44.3398.4680.94383forward
CNT30216750Coffea canephoraKalanchoe fedtschenkoi21.4137.7683.24185forward
CNT30648253Coffea canephoraRosa chinensis43.6356.5282.49377forward
CNT30688491Coffea canephoraTriticum urartu39.1278.9779.88338forward
CNT30350932Coffea canephoraEragrostis tef35.4268.4681.7306forward
CNT30366570Coffea canephoraSorghum bicolor26.6237.5881.74230forward
CNT30154742Coffea canephoraPrunus persica51.6253.1682.29446forward
CNT30410012Coffea canephoraPapaver somniferum35.8881.5879.68310forward
CNT30573870Coffea canephoraVitis vinifera44.3354.3383.03383forward
CNT30705862Coffea canephoraPrunus avium53.0143.1381.66458forward
CNT3051546Coffea canephoraAmborella trichopoda33.9160.7983.28293forward
CNT30103173Coffea canephoraOryza rufipogon28.725.5481.05248forward
CNT30584594Coffea canephoraEchinochloa crusgalli27.3138.1981.78236forward
CNT30497833Coffea canephoraDigitaria exilis27.6627.182.01239forward
CNT30176441Coffea canephoraVigna angularis43.6362.3180.64377forward
CNT30114394Coffea canephoraFicus carica18.6327.0681.99161forward

Expression of CNT30500730

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MRGCIQGMMGYNLEMIVERKLIPSLAQKERTEHLHEVTTGHLDSSNNLETSSPHGRAFHQKANDQVSCQILGYPPCNWEEKSQ*

>peptide 2 (29 aa)
MLGYKMGRSGCMLGKWGYNSERSDYNWEK*

Sequence

>CNT30500730
GGACTGTATGGGCTTGAAGGTGACAGCTTCGGACTAGTTGGGGAGTATGCAAGTGAAGGGCTGTACCTTGCCGAGGGATTGTAGCTAGGAGACGTGGGAC
TATAGCTCGGTGAGGTAGGGCTATAACTTGGGGAGGTGGGGCTGTAACCCGGAGAAGTTGGACTATATGCAGGTGATGTGGGACTGTATGATGGAGAGGT
TGGGCTATAAGAAGGTGAGGTAGGGCTATAAGAAGGTGAGGTAGGGCTGTAAGAAGGTGATGTTGGGCTATAAGATGGGGAGGTCGGGCTGTATGCTGGG
GAAGTGGGGCTATAACTCGGAGAGGTCGGACTATAACTGGGAGAAGTAGGACTATAACTTGGAGATGTTGGGCTATAACTGGGAGATGTGGGGCTGTAGC
TGGGAGAAGTGGGTGAGTATGAAGGACTAGTTGGAGAATAAGCAGGACTAGTTGGGCTATATCCAGGAGAACTGGGACTATAAGTAGGAGAAGTTGGACT
ATAACCAGGGGAAGTGGGGCTGTAACCAGGGGATGTAGGGCTGTAACCTGGAGAAGTGGGGCTGTAACCAGGGGATGAGGGGCTGTATCCAAGGGATGAT
GGGCTATAACCTGGAGATGATTGTGGAGAGAAAGTTAATCCCATCGCTTGCACAAAAGGAGAGAACTGAGCATCTGCATGAGGTGACAACCGGGCATTTG
GACTCGTCAAATAACCTGGAGACATCATCCCCTCATGGTAGGGCGTTCCACCAAAAGGCGAACGACCAGGTGTCATGCCAAATTCTAGGTTACCCTCCAT
GTAACTGGGAAGAGAAATCTCAATAGCCTGTTTCAACATCTCCTCGTTGAGGTACAAGGCACAG