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Detailed information on CNT30500458


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SWW6|CESA7_ARATH, E-value = 4e-101

BLAST vs NONCODE:
NONPOPT001661, E-value = 2e-83

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672342Coffea canephoraSetaria viridis40.6436.8381.58228forward
CNT30270249Coffea canephoraChenopodium quinoa63.117.778.81354forward
CNT30287901Coffea canephoraTriticum aestivum24.9652.8384.29140forward
CNT30224742Coffea canephoraHordeum vulgare17.8342.7482100forward
CNT30393905Coffea canephoraTriticum turgidum20.6835.6981.9116forward
CNT30144912Coffea canephoraMedicago truncatula15.8633.0983.1589forward
CNT30216Coffea canephoraZea mays25.3146.180.28142forward
CNT30229639Coffea canephoraAnanas comosus23.1722.1183.08130forward
CNT30689838Coffea canephoraTriticum urartu25.1347.3285.11141forward
CNT30722091Coffea canephoraTriticum spelta21.2113.0582.35119forward
CNT30572236Coffea canephoraVitis vinifera45.142.6684.98253forward
CNT3026929Coffea canephoraPopulus trichocarpa52.2352.5184.3293forward
CNT30112612Coffea canephoraFicus carica32.9820.2678.92185forward

Expression of CNT30500458

Peptides detected in this lncRNA

>peptide 1 (73 aa)
KIEYHSFAKQKFHRTLGFQYKRVNSDPEQGKYRSQKYRPDDDNCGRPILLTHETFKEWIEMDNHPEGKEELSK*

>peptide 2 (65 aa)
MASEIPATTPTRLITRIVVGGMSRVVHLKAYNSAKSSSSDALDVTVKLVSIPAKTFRRPCMTANR*

>peptide 3 (59 aa)
TKLSIILLLNKNFTGPLVFSINGSIRTQSKENIEAKSTDQMMTIVGVLFCLPMRPLRNG*

>peptide 4 (39 aa)
MDRDGQSPRRQRRAFQIKDPMIEIHCLWHRRSQQQHQLG*

Sequence

>CNT30500458
ACAAAATTGAGTATCATTCTTTTGCTAAACAAAAATTTCACAGGACCCTTGGTTTTCAGTATAAACGGGTCAATTCGGACCCAGAGCAAGGAAAATATAG
AAGCCAAAAGTACCGACCAGATGATGACAATTGTGGGCGTCCTATTCTGCTTACCCATGAGACCTTTAAGGAATGGATAGAGATGGACAATCACCCAGAA
GGCAAAGAAGAGCTTTCCAAATAAAGGACCCCATGATTGAGATCCATTGTTTATGGCATCGGAGATCCCAGCAACAACACCAACTAGGTTGATTACTAGA
ATAGTGGTTGGTGGGATGAGCAGGGTAGTCCATTTGAAGGCATATAACTCAGCAAAGTCATCGTCATCTGATGCCTTAGATGTGACAGTGAAGTTGGTGT
CAATCCCAGCCAAAACCTTTAGAAGACCTTGTATGACAGCAAACAGGTGAGCAGAGATACCACCAATAACCCAAAATTGCTCATTTCTCCACCACTCCTC
AATGCTAACTCCACTCCACCTTAGCTCAAGGATGCCAGTAGTGAAAATTGAGAGGAAGAGC