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Detailed information on CNT30500449


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 5e-99

BLAST vs NONCODE:
NONMTRT001024, E-value = 1e-62

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3025196Coffea canephoraPopulus trichocarpa29.3865.386.33461forward

Expression of CNT30500449

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MRYSSTNKCIKRKKSLEEPNSKPTRGSNNRYYGSLKYPNPTSA*

>peptide 2 (61 aa)
MQHSETTTQTQDKVKGGLFLDVIICQSPSIFQLFTSKDQSLLVRWDPLLVLDLSLDVINRI*

>peptide 3 (34 aa)
MVHSNTPTLHLHSNYKIKELILNIRSGFNQIPEP*

Sequence

>CNT30500449
TGAGAGAATGCTAATATCGATTAAAAGTAAAATTTCCAGGGTGTAAATATTGAAAACTTCGGAACTTTATTAACTTATCAAATAACACCGCCATTAATTC
CCATCACAAACATGGAACACCACCACCAAATCCCCAAACTATACATTTGAAAAAAAACACACTTAGGAAGCTATTAGGGCCCATGGCTTGGACACGGACA
GAAATCAAGCAGACAAACACAAAAGACTACCAACTTCAAGAGACAGCCTTCAACTGCATATAGATGCAGCATTCAGAAACCACCACGCAGACGCAGGACA
AGGTGAAGGGTGGACTCTTTCTGGATGTTATAATCTGCCAAAGTCCTTCCATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGCTGGTCAGGTGGGA
TCCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTATCAATCGTATCTGAGCTCTCCACCTCCAAAGTGATGGTCTTTCCAGTCAGAGTCTTGACAAAAAT
TTGCATTCCTCCTCGCAACCTGAGCACCAGATGAAGGGTTGATTCCTTCTGGATGTTGTAATCTGCAAGGGTCCGGCCATCCTCAAGCTGCTTACCAGCA
AAGATCAACCTTTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTGGCTTTCACATTATCAATTGTGTCGGAGCTTTCAACTTCAAGAGTGATGG
TCTTCCCGGTAAGGGTTTTCACGAAGATTTGCATCTGTCAGAATTAAAATAAGCACAAACCCAAACCTAATCAGATTTGATTATGAGATATTCTTCAACC
AACAAATGCATAAAAAGAAAGAAATCACTTGAAGAACCAAATTCAAAACCAACTAGGGGGTCAAATAATAGGTATTATGGTTCACTCAAATACCCCAACC
CTACATCTGCATAGCAACTACAAAATCAAAGAGTTAATTCTTAACATAAGAAGCGGTTTCAATCAAATTCCTGAACCCTAATAAACAAGGCCAAAAAAAA
AAAAATCGACCAATTCCACCTTTTCCTATCCTCTATAGGGAAAAAAGAAAGGTTTACAGCTTAATTTACTAATAATCAACAAAAACTCACAGCAAAATAA
ACAAATCAGACAAAACCAAAAGATTGAAGGGGAAAATTTTCTCGTTCAACCAGAGTAATCAAATCAAATCAAATCAAATCAGAACAGATCCGTCAAATAT
AACGAAAGTTTAATTTAAATTCCAACTCCAGCCGCAACCTTAATTCACCATCCATCTAAAAGTCAAGCATCATATACATAATCAACAAAAATTCACATAA
CCGAGAAGCAAGCAAGACAATCGATGAAAAAGCAAATACCTTGCGAGAGGAAACAGAAGGAAGGCGGCTTTCGATAGAAGATTTGATGAGAGTTTTAGAG
GAAGAGATGTAGATTATATAATGAAGATGTGAATGATAAAGCAAAAGGATTATCCGGGGTTATTTATAGGAGCGATGACCGACTCCAGACGGAACAGGTT
CCTGTGAGGCGTTGGGTCAGTCATGACGCCTGCGTGCCAATTTGTTAGTTGCCTGCCTTACCCTTGCCC