« Back to Coffea canephora search


Detailed information on CNT30500417


BLAST search results

BLAST vs Swiss-Prot:
sp|P69322|UBIQP_PEA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-154

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532219Coffea canephoraEucalyptus grandis52.1462.4381.91050forward
CNT30516063Coffea canephoraJuglans regia42.4586.5481.05855forward
CNT30701438Coffea canephoraQuercus lobata56.9578.6281.431147forward
CNT30615929Coffea canephoraSesamum indicum56.734.1480.121142forward
CNT30525259Coffea canephoraPhaseolus vulgaris53.6264.2581.851080forward
CNT30629001Coffea canephoraVigna unguiculata52.8887.0181.61065forward
CNT30156094Coffea canephoraPistacia vera43.370.6182.45872forward
CNT3097291Coffea canephoraSolanum tuberosum56.7574.2281.631143forward
CNT3085936Coffea canephoraVigna radiata57.453.4481.311156forward
CNT30145248Coffea canephoraMedicago truncatula53.3354.7182.51074forward
CNT30605652Coffea canephoraGossypium raimondii43.588.8481.62876forward
CNT30626099Coffea canephoraDaucus carota56.7536.6282.591143forward
CNT30706353Coffea canephoraPrunus avium56.664.5982.541140forward
CNT3032754Coffea canephoraTheobroma cacao55.4185.0681.451116forward

Expression of CNT30500417

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MKERGDVEEIYSVKSLSDDRLRRGNGSSLRSRSPMTFT

>peptide 2 (30 aa)
MVFPVRVLTKTCIPPLNLRTKWSVDSFWML*

>peptide 3 (61 aa)
MEHLEATTQTQNKVKGGLFLDVIICQSPSIFQLFTSKDQSLLVRWDPLLVLDLSFDVINRI*

>peptide 4 (49 aa)
MVFPVRVFTKICICSINKERKSAMLNCKFLNLKLTHQLRLLLIETPKPA*

Sequence

>CNT30500417
TTCCCGTTACATACATACATGGAATAACACCACCAGCAAACCCTGGAACAATACTAAATTAAAAACTTTTTAAGAAGCCATTGGCCCAAGGCATAAACAC
CAAACACAAGTCAGCCAAGCGGGCTGAAACAGATGGAGCATTTAGAAGCCACCACGCAGACGCAGAACAAGGTGAAGGGTGGACTCTTTCTGGATGTTAT
AATCTGCCAAAGTCCTTCCATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGCTGGTCAGGTGGGATCCCCTCCTTGTCCTGGATCTTAGCTTTGAC
GTTATCAATCGTATCTGAGCTCTCCACCTCCAAAGTGATGGTCTTTCCAGTCAGAGTCTTAACAAAAACTTGCATTCCCCCCCTCAACCTGAGAACCAAA
TGGAGCGTTGATTCCTTCTGGATGTTGTAATCTGCAAGCGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTTTGCTGGTCTGGTGGTATGC
CCTCCTTGTCCTGAATTTTTGCCTTCACATTATCTATAGTATCTGAACTCTCCACCTCAAGAGTTATGGTCTTCCCTGTCAACGTCTTGACAAAAATCTG
CATTCCACCCCTCAATCTCAGCACTAAATGAAGAGTTGACTCTTTCTGAATATTATAGTCAGCAAGAGTCCTGCCATCTTCAAGCTGCTTGCCAGCAAAG
ATCAGCCTCTGCTGATCCGGAGGGATTCCCTCCTTATCCTGGATCTTAGCTTTCACGTTGTCGATTGTATCTGAGCTCTCAACCTCCAAAGTGATAGTCT
TTCCCGTGAGGGTCTTCACGAAGATCTGCATCCCTCCCCTCAACCTAAGCACCAAGTGAAGGGTCGACTCCTTCTGAATGTTATAATCAGCAAGGGTGCG
GCCATCTTCAAGTTGTTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCTTTGTCCTGAATCTTAGCCTTGACATTATCAATTGTATCA
GAGCTTTCAACTTCGAGGGTAATTGTTTTTCCGGTAAGGGTCTTTACAAAGATCTGCATGCCTCCCCTCAGGCGCAGAACCAAGTGAAGGGTGGATTCCT
TCTGAATGTTGTAGTCGGCAAGGGTGCGTCCATCCTCCAGCTGTTTTCCGGCAAATATCAGCCTTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAAT
CTTGGCTTTCACATTATCAATTGGTGTAGAGCTTTCAACTTCAAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAGATTTGCATCTGCTCAATAAAC
AAAGAACGAAAATCAGCTATGTTAAATTGCAAATTTCTCAACCTAAAATTGACACATCAACTCCGTTTATTACTAATTGAAACTCCAAAACCAGCTTAAA
TCGCTAGGAAAAACAAAACAATAGCAAAAGGAATCCTTCTGCAGAAAAAAACAACCAACAACTATTTGACTGACAGCGATCGAAGACACTAGAGCAAACT
TGTCAAAATCGAGAATTTATTAAAGACCCTAGAGAAGCATCATTCAATTTCCAAATATTATAAAAACCATAGGCAAGATCATCAAAATCCAAAAAATAAA
ATCGAAAACCCTAAAGCAAAATCAACCAACCGGACTAATTGAAAAAATTAACCAATAAATTATCTCAGAATAACCCAAACAGATACGTCAGAAAAAATAC
AAGATTAATCCCAATTCACCACCAATCTCAAAGCCAAACGCCCAAAACATAGATTTTAGAACTAAACAATTTACTCTTTGAATTACTAAAGATTATCCAA
GACAGATCAATTACCTTGTTGGGATAGAAAATAGAAAGCCGCTTTTGATAGAAGAATTGGGGAGAATTTCAGAATACTAGTACAACAAGAAAGGATGAAT
GAAAGAAAGAGGGGATGTTGAGGAAATTTATAGCGTGAAGAGTCTGAGCGATGACCGACTTAGAAGGGGAAACGGGAGTTCCTTGAGGAGTCGGTCACCA
ATGACGTTTACGTC