Detailed information on CNT30500405


BLAST search results

BLAST vs Swiss-Prot:
sp|P49037|SUS_SOLLC, E-value = 4e-80

BLAST vs NONCODE:
NONTCAT003036, E-value = 8e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377308Coffea canephoraArabidopsis thaliana29.6433.0380.95147forward
CNT3019859Coffea canephoraCitrullus lanatus23.1915.1184.35115forward
CNT3061548Coffea canephoraArabidopsis lyrata49.630.0482.11246forward
CNT30610552Coffea canephoraGossypium raimondii47.9837.0781.93238forward
CNT30713527Coffea canephoraMalus domestica golden15.3224.286.8476forward
CNT30626879Coffea canephoraDaucus carota71.7763.9182.02356forward
CNT30478109Coffea canephoraArabidopsis halleri29.8459.4482.43148forward
CNT3023679Coffea canephoraPopulus trichocarpa31.8528.0686.71158forward

Expression of CNT30500405

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MSWPRPQSTQMPHKMQVARMLPWCQQCTDRVHHF*

>peptide 2 (32 aa)
IKHFQITADLLAIKLGNTFPESINSSQRQQPI*

>peptide 3 (29 aa)
MISAGPPWLVANVGKPHVMASTTVNPNAS*

>peptide 4 (47 aa)
KTFPDNGGSPGDQAWKHISRIHKLQPASATDLSKFARCTFGFQTATG*

>peptide 5 (74 aa)
MNNDLSRTTMVGCKRWQTTCHGLDHSQPKCLIKCRLHECSLGVSNVPIEFTISNPVHLRRNPSELAVQVVSLYQ*

Sequence

>CNT30500405
ATAAAACATTTCCAGATAACGGCGGATCTCCTGGCGATCAAGCTTGGAAACACATTTCCAGAATCCATAAACTCCAGCCAGCGTCAGCAACCGATCTGAG
TAAATTTGCCAGGTGTACCTTCGGATTTCAAACAGCCACCGGCTGAAATGGTGTCCCAGTAAGAAGGCTCTTTCTTGCACCTTTCAAAGAAATTGGCAAG
GAGCTCGCTGACCTGCTCACCGTGGTATGGATCAATGTGGAAACCAGATTTCCCATGAATAATGATCTCAGCAGGACCACCATGGTTGGTTGCAAACGTT
GGCAAACCACATGTCATGGCCTCGACCACAGTCAACCCAAATGCCTCATAAAATGCAGGTTGCACGAATGCTCCCTTGGTGTCAGCAATGTACCGATAGA
GTTCACCATTTCTAACCCTGTTCATCTGAGAAGAAATCCATCTGAATTGGCCGTTCAAGTTGTAAGTCTCTATCAATGAATACATTTTCTTCATCT