Detailed information on CNT30500372


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698389Coffea canephoraQuercus lobata83.1660.4891.23889reverse complement
CNT30619071Coffea canephoraSesamum indicum72.97100.2690.77780forward
CNT30730459Coffea canephoraCorchorus capsularis82.674.5891.39883forward
CNT30639035Coffea canephoraCapsicum annuum82.8871.5793.12886forward
CNT3089447Coffea canephoraVigna radiata76.7176.9286.83820forward
CNT30544396Coffea canephoraBrassica napus82.674.4589.47883reverse complement
CNT30424816Coffea canephoraPapaver somniferum82.8866.7790.41886forward
CNT30726571Coffea canephoraLupinus angustifolius57.3470.789.56613forward

Expression of CNT30500372

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MRPGRMWNGASRSADRLGAWTSADWGGGQSPGCRYACGDAVASIVAGHARHRRASASARSRCWPAGTPFGPS*

>peptide 2 (79 aa)
MPVETPSPRSWRGMRAIGVLRHLRAPDAGLRAPHSARLETRTKESDMCASQRASKPVRRKEADWRDPPCGVHRRPTLIF*

>peptide 3 (40 aa)
MQPQSGGKFCPRLNTGERPIANKYREEKMKRTLKRESKSA*

>peptide 4 (37 aa)
MGAGDAPRSNVERRQPVRRSARGVDQRRLGRRPKPGL*

>peptide 5 (58 aa)
PLVVVESLNSSPCRAVRPPAAVGAPTTLKRIALISTATPGQAGLPAEFKHINKRRKRN*

>peptide 6 (42 aa)
MPERSEARGNSGGGPQRVFCFRLSSGLWDYFTLGLASVFNENS

>peptide 7 (30 aa)
MLACGHPIRPVLKHGPRSLTCVRVNGRVNP*

Sequence

>CNT30500372
CACCACTAGTGGTGGTTGAGTCCCTCAACTCGAGTCCTTGTCGTGCCGTTAGACCACCCGCCGCAGTCGGGGCTCCGACGACCCTGAAGAGAATCGCTCT
CATCTCGACGGCGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGG
CGAGCGAACCGGGAACAGCCCAAGCTTAGAATCGGGCGGCTCCGCCGTCCGAATTGTAGCCTGGAGAAGCGTCCTCAGCGGCGCACCGGGCCCAAGTCCC
CTGGAATGGGGCACCGGAGAGGGTGACAGTCCCGTCGTGCCTGGACCCTGTCGCACCACGAGGCGCTGTCGGCGAGTCGGGTTGTTTGGGAATGCAGCCC
CAATCGGGCGGTAAATTCTGTCCAAGGCTAAATACCGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGAAAAGATGAAAAGGACTTTGAAAAGAGAGT
CAAAGAGTGCTTGAAATTGTCGGAAGGGAAGCGAATGGGGGCCGGCGATGCGCCCCGGTCGAATGTGGAACGGCGCCAGCCGGTCCGCCGATCGGCTCGG
GGCGTGGACCAGCGCAGATTGGGGCGGCGGCCAAAGCCCGGGCTGTAGATATGCCTGTGGAGACGCCGTCGCCTCGATCGTGGCGGGGCATGCGCGCCAT
CGGCGTGCTTCGGCATCTGCGCGCTCCCGATGCTGGCCTGCGGGCACCCCATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGT
CAACGGGCGAGTAAACCCGTAAGGCGCAAGGAAGCTGATTGGCGGGATCCCCCCTGCGGGGTGCACCGCCGACCGACCTTGATCTTCTGAGAAGGGTTCG
AGTGTAAGCATACCTGTCGGGACCCGAAAGATAGTGAACTATGCCTGAGCGGAGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGTGTTTTTTGT
TTCAGGCTTTCGTCTGGGCTCTGGGATTATTTTACACTTGGGCTTGCATCTGTTTTTAATGAAAATAGC