Detailed information on CNT30500332


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 5e-165

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-114

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546269Coffea canephoraIpomoea triloba90.8678.6283.57706forward
CNT30275114Coffea canephoraChenopodium quinoa85.0794.4385.63661forward
CNT30405422Coffea canephoraBeta vulgaris90.8673.7784.28706forward
CNT30506305Coffea canephoraNicotiana attenuata85.4670.4184.34664forward
CNT30157672Coffea canephoraPistacia vera86.3664.6483.76671forward
CNT30637294Coffea canephoraCapsicum annuum84.4385.3183.99656forward
CNT30120609Coffea canephoraCitrus clementina84.6878.7184.19658forward

Expression of CNT30500332

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSRVIVFPVNVLTKICMPPLNLSTK*

>peptide 2 (43 aa)
MVSELSTSRVMVLPVRVLTKICICSDGRSEFRSQNPINRKEEQS

>peptide 3 (40 aa)
MVSELSTSRVIVFPVRVLTKICMPPLRRSTRWRVDSFWIL*

Sequence

>CNT30500332
CGGTCAAAGTCTTCACAAAGATCTGCATTCCTCCTCTCAACCTAAGCACCAAGTGAAGGGTTGACTCCTTCTGAATGTTATAATCCGCCAGAGTGCGTCC
ATCCTCAAGCTGCTTACCAGCAAAGATCAACCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGAATTTTTGCCTTGACATTGTCTATGGTATCAGAG
CTCTCCACCTCAAGGGTGATTGTCTTCCCAGTCAATGTCTTGACGAAAATCTGCATGCCGCCCCTCAACCTCAGCACCAAGTGAAGGGTGGACTCTTTCT
GAATGTTGTAATCAGCAAGAGTCCTTCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGAATCTT
AGCCTTGACATTATCAATGGTGTCAGAGCTTTCCACTTCGAGGGTGATAGTCTTCCCGGTGAGGGTCTTGACGAAAATTTGCATGCCTCCCCTAAGACGA
AGCACCAGGTGGAGGGTGGACTCCTTTTGGATATTGTAGTCAGCGAGGGTGCGGCCATCCTCTAGTTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCG
GGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAACTCTCGACTTCGAGAGTGATGGTCTTGCCGGTAAGAGTTTTGAC
AAAGATCTGCATCTGCTCAGATGGAAGATCCGAATTCAGAAGTCAGAATCCAATTAATCGAAAAGAAGAACAATCAC