Detailed information on CNT30500314


BLAST search results

BLAST vs Swiss-Prot:
sp|O80860|FTSH2_ARATH, E-value = 3e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30380808Coffea canephoraManihot esculenta23.615.6788.57105forward
CNT30170808Coffea canephoraPistacia vera36.8524.0582.93164forward
CNT30326203Coffea canephoraAsparagus officinalis30.5619.8883.82136forward
CNT30119340Coffea canephoraCitrus clementina24.0437.5487.85107forward

Expression of CNT30500314

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MPKITSSAALPPSPPTILAKSCCLEIKVGSSAGINQVRPRA*

>peptide 2 (59 aa)
SFSRRTSTILSIASRLFLMWIKATSYAVSEILLTAASMSSASFSDIEFLAIIRIMTSPL*

>peptide 3 (29 aa)
MSPSKTTGQYLTCQRSLPQQLFHQAPQQF*

Sequence

>CNT30500314
CTCTTTCTCAAGGAGGACTTCAACAATTTTATCAATTGCTTCGCGGTTATTCCTAATGTGGATTAAAGCAACCTCATACGCAGTATCTGAAATTCTCTTG
ACAGCAGCATCAATGTCTTCAGCAAGCTTCTCGGACATTGAATTCCTAGCCATCATTCGCATAATGACGTCGCCACTTTGAGCTGATGAGTCCATCAAAG
ACCACGGGCCAATATCTGACATGCCAAAGATCACTTCCTCAGCAGCTCTTCCACCAAGCCCCCCAACAATTCTAGCAAAGAGTTGCTGCTTGGAGATCAA
GGTTGGGTCATCTGCAGGAATAAACCAGGTCAGACCCCGAGCCTGACCACGTGGGACTAGGGTGACCTTCTGAACAGCATCATGCCCTGGAGTGAGAGTT
CTGGATAATAACAAATTTGAGACATTAGTCTAGACTCTAGAGTCT