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Detailed information on CNT30500052


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XT99|AKR2_ORYSJ, E-value = 3e-41

BLAST vs NONCODE:
NONPOPT001153, E-value = 2e-07

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692748Coffea canephoraOryza sativa22.5213.3588.1459forward
CNT30316651Coffea canephoraCorylus avellana5026.6383.97131forward
CNT30703860Coffea canephoraQuercus lobata62.2160.1584.05163forward
CNT3070513Coffea canephoraQuercus suber62.2123.9482.82163forward
CNT30492599Coffea canephoraOlea europaea60.6931.6781.76159forward
CNT3096605Coffea canephoraSolanum tuberosum50.3815.7782.58132forward
CNT30192114Coffea canephoraSecale cereale24.817.9987.6965forward
CNT30586652Coffea canephoraMusa acuminata61.4518.0380.75161forward
CNT30543366Coffea canephoraBrassica napus29.0116.7884.2176forward
CNT30146672Coffea canephoraMedicago truncatula35.8839.6685.1194forward
CNT3076889Coffea canephoraBrassica juncea29.0117.5184.2176forward
CNT30133477Coffea canephoraLolium perenne24.8132.1887.6965forward
CNT30370023Coffea canephoraOryza glumipatula20.9922.5487.2755forward
CNT30152051Coffea canephoraPrunus persica62.620.8982.32164forward
CNT30570762Coffea canephoraVitis vinifera62.2139.2885.89163forward
CNT30704154Coffea canephoraPrunus avium62.620.6382.32164forward
CNT3022456Coffea canephoraPopulus trichocarpa55.3420.8380.69145forward
CNT30101518Coffea canephoraOryza rufipogon22.5224.3888.1459forward
CNT30603989Coffea canephoraOryza punctata22.5227.0686.4459forward

Expression of CNT30500052

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MLAVMEYNPSLKQWHWPAHTTSCCAPNSLLETLAYPTLYEFQN

Sequence

>CNT30500052
AGATTCAAGTTCAGCCATATCTTCTGCTGACAGTTTTACAGACAAAGCTCCTATATTCTGATTGAGGTTCTCAATCTTGGTAGTGCCAGGTATGGGGCAA
ACATCATTGCCTTGGTGATGGACCCAGGCCAATGCTAGCTGTGATGGAGTACAACCCTTCCTTGAAGCAATGGCATTGGCCCGCTCATACAACTTCTTGT
TGTGCTCCAAATTCTCTGCTTGAAACCTTGGCATACCCTACATTGTATGAATTTCAAAATTT