Detailed information on CNT30500037


BLAST search results

BLAST vs Swiss-Prot:
sp|P62981|RS27A_SOLTU, E-value = 3e-58

BLAST vs NONCODE:
NONPOPT001132, E-value = 6e-74

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693823Coffea canephoraOryza sativa33.2857.8692.31195forward
CNT30674769Coffea canephoraSetaria viridis22.1826.4292.31130forward
CNT30523172Coffea canephoraSetaria italica31.429.0788.59184forward
CNT3091075Coffea canephoraSolanum tuberosum21.8433.7792.19128forward
CNT30553804Coffea canephoraOryza glaberrima22.1821.5691.54130forward

Expression of CNT30500037

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MIGHESPSATLSIRALLPEPLDLAGVVDLVELKDG*

>peptide 2 (48 aa)
MPSLSWILALTLSMVSEDSTSRVMVFPVRVFTKICIFDDGGCRLRCCC*

Sequence

>CNT30500037
CTGCTAATGTTCAATTAGACTAGTAACCATAAAGTTTATAAAAACAAAAAGGGGCAGAGAAGTTCCCTCAGTCACCGCCGGCCTTCTGGTAAACATAGGT
GAGGCCACACTTGCCGCAATAGTGCCTGTCAAAATGATTGGCCATGAAAGTCCCAGCGCCACACTCAGCATTAGGGCACTCCTTCCTGAGCCTCTGGACC
TTGCCGGAGTCGTCGACCTTGTAGAACTGAAGGACGGCTAGCTTGACCTTCTTCTTCTTGTGCTTGATCTTCTTGGGCTTGGTGTAGGTCTTCTTCTTGC
GCTTCTTGGCGCCACCACGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGCGCTGCTGGTCCGGGGGTATGCCCT
CCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGTCAGGGTTTTCACGAAGATCTGCAT
CTTTGACGACGGCGGCTGCCGCCTCCGCTGCTGCTGCTAGGGTTTCGGGAAATGAATAAAGGGGTTTGAGAATAAAGGGGTTGATT