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Detailed information on CNT30499644


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674307Coffea canephoraSetaria viridis21.663.7186.75151reverse complement
CNT30232940Coffea canephoraAnanas comosus16.6428.8687.93116reverse complement

Expression of CNT30499644

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MPGGMISADDHMLCPSSRSRRKSDGGIVRRVKAQKSPFLTETQVVLHLGTLWG*

>peptide 2 (40 aa)
MLFRYEDFVKSFHYEVFNMSPRGLINCGNRYFFKIFPAFLV

Sequence

>CNT30499644
CCCAACTCGAACCATGTTTAATTATTTAACCGATTAATCGGATTGAGAAACTTAATCACACAAAACCAAAATCCATTAAACTAAAAACCCAAAAAACAAA
ATTAAAGATTAAACAAGGCACAAAAAAAAACCCCCCACAAGGCCACGATTCTGGTTTCCCATCAGATTTCACTCCTCCTCAAAAGCTTCCGTCAGATATC
ACTCATCAGCTCATCAGAGATCACTCACAATTCAAATGCCTGGTGGCATGATTTCGGCTGATGATCATATGCTATGTCCTTCGTCACGAAGTCGAAGGAA
ATCTGATGGTGGAATCGTGCGCCGTGTGAAAGCACAAAAATCGCCGTTCTTAACCGAGACTCAGGTTGTGCTCCATCTCGGAACCTTGTGGGGTTAGGAG
TAAAGCATCCCAAGGTTAGCGCATCTCTAATAGCGTGGAGAAACATTGGGAACCCCAATTTCGTGGTCATTCTCCGGAGCCCTTTCTTCAGGTTATGAGT
GATCAATGGGCAATTGGACGAAGCTCCCCACCTGTTCGATCAAATGCCTAGGCGTCATGAATCATTTTTTTCATGCTATTTCGGTATGAAGATTTTGTGA
AGTCCTTTCACTATGAAGTTTTCAACATGTCTCCAAGAGGTCTTATAAATTGTGGAAACAGGTATTTCTTCAAAATTTTTCCTGCTTTTCTTGTGCT