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Detailed information on CNT30499576


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9AV71|CESA7_ORYSJ, E-value = 7e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30608876Coffea canephoraGossypium raimondii25.9827.1982.88146forward
CNT3022600Coffea canephoraPopulus trichocarpa45.5522.2683.2256forward
CNT30100005Coffea canephoraOryza rufipogon11.5727.987.6965forward
CNT30115557Coffea canephoraOryza nivara33.9930.9679.58191forward

Expression of CNT30499576

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MTQNCSFLHQSSMLTPLHLSSSTPVTMIDMKRAMNHRLPKLF

>peptide 2 (38 aa)
LVSRKFTYASAFNSSSETGRILITDDIKLFLLATKGKT*

Sequence

>CNT30499576
ACTTGTATCTCGAAAATTTACATATGCCAGTGCCTTTAATTCCTCGTCCGAAACTGGTAGGATTCTTATCACTGACGACATAAAACTATTTTTACTTGCA
ACCAAAGGAAAGACCTAGCAAAATTGAACGAAATTGAGGAGCAACTGCATAAAGAAATGTACTAGTATAGGCTTGCTAGCACTCCACTCCGCATTGTTTG
AGTATGGGGTATATCCATTGTTAATTGCATCTGAAACTCCAGCAACAACACCAACCATATTCAGGATTATCAGAGTTGTTGGCGGGATGAGAAGGGTAGT
CCACTTGAACATGTAGAGCTCCCCAAACTCGGTGTCCTCAGCAGCCTTCGCTGTTACAGTAAAGTTGGTGTCGACTCCTGCAAGGACCTTTAGAAGGCCC
TGGAAGACAGCAAAAAGATGAGCTGAGACGCCACCTATGACCCAAAACTGCTCATTTCTCCACCAGTCCTCAATGCTGACGCCACTCCATCTGAGCTCAA
GCACGCCTGTGACTATGATTGACATGAAAAGAGCAATGAACCATAGGCTACCGAAGTTGTTT