Detailed information on CNT30499557


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515285Coffea canephoraJuglans regia49.8420.2183.01153reverse complement
CNT3046251Coffea canephoraPrunus dulcis47.8848.8484.35147reverse complement
CNT30158975Coffea canephoraPistacia vera32.928.6184.16101forward
CNT3084823Coffea canephoraVigna radiata48.2148.6882.43148reverse complement
CNT30612441Coffea canephoraArabis alpina46.5846.4383.92143forward
CNT30652801Coffea canephoraRosa chinensis45.2845.4285.61139reverse complement
CNT30215606Coffea canephoraHelianthus annuus36.4836.7283.04112reverse complement
CNT30716661Coffea canephoraMalus domestica golden48.2147.7483.78148reverse complement
CNT30154450Coffea canephoraPrunus persica46.5846.8983.92143reverse complement
CNT30706625Coffea canephoraPrunus avium44.957.2184.78138reverse complement
CNT30644410Coffea canephoraCannabis sativa50.1656.4183.77154forward
CNT3030049Coffea canephoraTheobroma cacao25.0825.0889.6177reverse complement
CNT30174907Coffea canephoraVigna angularis48.2148.5281.76148reverse complement

Expression of CNT30499557

Peptides detected in this lncRNA

>peptide 1 (72 aa)
KISKSVGPIRMTHLAIVDLCSSSLLSFHCEEREVLVALSSQPHAVSSTLGAKWSRPSLKPHGSALRLEWAGR*

>peptide 2 (33 aa)
MGRPVVSFTRPTIWNNPTFQHFNTPTRVTSSRDQ

Sequence

>CNT30499557
AAAAATTTCAAAAAGTGTTGGTCCAATTAGGATGACCCATTTGGCAATAGTGGACTTGTGCAGCTCTAGCCTGTTATCCTTCCACTGCGAGGAGCGGGAA
GTTCTCGTTGCTCTGTCAAGCCAGCCTCACGCAGTATCCTCCACTTTAGGAGCCAAGTGGTCCAGGCCTTCGCTCAAACCACATGGCTCAGCTCTCCGCT
TGGAATGGGCAGGCCGGTAGTTAGCTTCACAAGGCCTACCATCTGGAACAATCCAACGTTCCAACACTTTAATACCCCCACTCGGGTCACAAGCTCGCGC
GACCAAG