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Detailed information on CNT30499549


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 6e-99

BLAST vs NONCODE:
NONBNAT004786, E-value = 1e-10

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Coffea canephoraSetaria italica42.4527.7379.81208forward
CNT30530404Coffea canephoraEucalyptus grandis68.9895.2181.95338forward
CNT30316147Coffea canephoraCorylus avellana85.7156.3882.38420forward
CNT30703138Coffea canephoraQuercus lobata81.6376.3482.75400forward
CNT30277485Coffea canephoraChenopodium quinoa61.6335.482.78302forward
CNT3020608Coffea canephoraCitrullus lanatus84.4993.8881.64414forward
CNT30729539Coffea canephoraCorchorus capsularis86.1262.880.81422forward
CNT3068683Coffea canephoraQuercus suber81.6381.382.5400forward
CNT30524728Coffea canephoraPhaseolus vulgaris61.0255.3780.94299forward
CNT30486152Coffea canephoraOlea europaea84.945.9784.38416forward
CNT30506399Coffea canephoraNicotiana attenuata56.3383.3882.97276forward
CNT30177095Coffea canephoraSecale cereale37.5513.2880.98184forward
CNT30223417Coffea canephoraHordeum vulgare43.2793.3981.13212forward
CNT3084565Coffea canephoraVigna radiata62.0417.9981.58304forward
CNT30539234Coffea canephoraBrassica napus82.4544.1581.68404forward
CNT30145616Coffea canephoraMedicago truncatula41.4344.7184.24203forward
CNT30261302Coffea canephoraBrassica rapa85.7181.2481.19420forward
CNT30447453Coffea canephoraSaccharum spontaneum54.0846.2579.25265forward
CNT30131528Coffea canephoraLolium perenne50.6153.880.65248forward
CNT30231964Coffea canephoraAnanas comosus37.7615.1678.92185forward
CNT30653881Coffea canephoraRosa chinensis69.1831.7483.19339forward
CNT30718631Coffea canephoraMalus domestica golden79.868.1283.63391forward
CNT30339698Coffea canephoraEragrostis tef30.4112.0683.89149forward
CNT30477892Coffea canephoraArabidopsis halleri82.2437.6680.4403forward
CNT30359656Coffea canephoraLactuca sativa92.0426.6981.37451forward
CNT30411763Coffea canephoraPapaver somniferum44.919.5280.45220forward
CNT30570592Coffea canephoraVitis vinifera45.168.4284.16221forward
CNT30645151Coffea canephoraCannabis sativa91.0246.883.18446forward
CNT3055709Coffea canephoraAmborella trichopoda53.6740.2180.61263forward
CNT30105598Coffea canephoraOryza longistaminata60.4142.9678.38296forward
CNT30102778Coffea canephoraOryza rufipogon17.5533.9986.0586forward
CNT30574680Coffea canephoraOryza barthii33.8818.1281.93166forward
CNT30580107Coffea canephoraEchinochloa crusgalli38.5736.4282.01189forward
CNT30499107Coffea canephoraDigitaria exilis46.7358.5779.48229forward
CNT30115589Coffea canephoraOryza nivara33.8811.6381.93166forward
CNT30603506Coffea canephoraOryza punctata78.5776.6978.18385forward
CNT30332943Coffea canephoraCynara cardunculus9084.6479.82441forward
CNT3064271Coffea canephoraSelaginella moellendorffii54.4948.5581.27267forward
CNT3050773Coffea canephoraCucumis sativus84.2973.4980.39413forward

Expression of CNT30499549

Peptides detected in this lncRNA

>peptide 1 (99 aa)
MDRRSRASQVVDLVHLQQKGLDDVVPDELESRVPQVMLHILLPSREEIIYHDHAISSSHQTVHQMAPDEPGPTRHHDPQPLPLQPQRNFPARIEPSQLVL

>peptide 2 (31 aa)
CLVHTDGVDIAPVGFDLWMLQRVAVHLAGAG*

Sequence

>CNT30499549
GTGTCTTGTACATACCGATGGGGTTGACATTGCCCCAGTAGGTTTCGACTTGTGGATGTTGCAGAGGGTCGCCGTACACCTCGCTGGTGCTGGTTAGCAA
AAACCGGGCTCCCACTCTCTTTGCCAGTCCCAGCATGTTCAGAGTCCCAACCACGTTCGATATAATAGTCTTGACAGGATTGTGCTTGTAATGGACAGGA
GAAGCAGGGCAAGCCAAGTGGTAGATCTGGTCCACCTCCAACAGAAGGGGCTCGACGACGTCGTGCCTGATGAGCTCGAATCTAGGGTTCCCCAAGTGAT
GCTGCACATTCTCCTTCCTTCCCGTGAAGAAATTATCTACCACGATCACGCTATCTCCTCTAGCCATCAGACGGTCCACCAGATGGCTCCCGACGAACCC
GGCCCCACCCGTCACCACGATCCTCAGCCCCTTCCTCTTCAGCCCCAGAGGAATTTTCCCGCCCGAATTGAACCCTCCCAGCTGGTTCTG