Detailed information on CNT30499258


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONBNAT002216, E-value = 5e-76

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30633568Digitaria exilisCapsicum annuum64.2369.8983.69650forward
CNT3099363Digitaria exilisSolanum tuberosum65.2263.1683.79660forward
CNT30508800Digitaria exilisSolanum lycopersicum60.9766.1383.79617forward

Expression of CNT30499258

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHRQWITSSSRFLAKVSGSAESPAVSQP*

>peptide 2 (57 aa)
MISEVLQRALSCNNGLNKESKHGEHSEAAILDLLHLELSKRLRVISKAQRVKAPTRV*

>peptide 3 (40 aa)
PIRSRPCVQIHYWYNNLRSLAPFTNTCTSFITYEYVRLRQ*

>peptide 4 (34 aa)
MVMRPSPKTSLVVVVGLPTSAREVRAMVAAAMSIR

>peptide 5 (78 aa)
DQSGPDRAYRYTTGTTTCDPWLPSQILVHPSSHTNTYVYDSSRRTRPRRSLRFRFTSPSNIHARMPSTAHLPGTKLVA*

>peptide 6 (84 aa)
TNPVQTVRTDTLLVQQPAIPGSLHKYLYILHHIRIRTSTTVVDVRDPAGRFAFASLHLATSTHACPAPLTCRERSWWRKPKRCC*

>peptide 7 (50 aa)
MENIARRPFLISFTLSSANASGSSARPNGSKLPPGYNGSTTSPSGPPAIR*

Sequence

>CNT30499258
GACCAATCCGGTCCAGACCGTGCGTACAGATACACTACTGGTACAACAACCTGCGATCCCTGGCTCCCTTCACAAATACTTGTACATCCTTCATCACATA
CGAATACGTACGTCTACGACAGTAGTAGACGTACGCGACCCCGCAGGTCGCTTCGCTTTCGCTTCACTTCACCTAGCAACATCCACGCACGCATGCCCAG
CACCGCTCACTTGCCGGGAACGAAGTTGGTGGCGTAAGCCCAAGCGTTGTTGTTGACGGGGTCAGCGAGATGATCAGCGAGGTTCTCCAACGGGCCCTTT
CCTGTAACAATGGCCTGAACAAAGAATCCAAACATGGAGAACATAGCGAGGCGGCCATTCTTGATCTCCTTCACCTTGAGCTCAGCAAACGCCTCCGGGT
CATCAGCAAGGCCCAACGGGTCAAAGCTCCCACCAGGGTATAATGGGTCGACGACCTCCCCAAGTGGGCCGCCAGCAATACGGTAGCCCTCGACGGCGCC
CATGAGCACCACCTGGCAGGCCCAGATTGCCAAGATGCTCTGGGCATGGATCAGGCTCGGGTTGCCAAGGTAATCCAGCCCACCCTCGCTGAAGATCTGT
GAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAACACACAGCCCAGCGCGCCGAGCATGGCCCACCGGC
AGTGGATCACCTCGAGCTCGCGGTTCTTGGCGAAGGTCTCTGGATCGGCCGAGAGCCCCGCGGTGTCCCAGCCATAGTCGCCGGGGAACTCGCCGGTGAG
GTAGCTTGGGGGCTCGCCGGAGAGTGGGCCGAGGTAGAGGACGCGGTCGGGCCCATACCATGGGCTCCCGGACACCGCTGGCTTGGGCTTGGCGGAGGTC
TTGCGCATGGTGATGCGGCCCTCGCCGAAGACGTCCCTGGTGGTGGTCGTCGGCTTGCCGACGAGCGCGCGGGAGGTGAGGGCCATGGTGGCGGCGGCCA
TGTCGATCAGAT