CANTATAdb - search

Detailed information on CNT3049908

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30671532	Cucumis sativus	Setaria viridis	12.3	27.22	87.13	101	forward
CNT30379145	Cucumis sativus	Manihot esculenta	11.08	20.22	90.11	91	forward
CNT30487977	Cucumis sativus	Olea europaea	7.43	23.46	91.8	61	forward
CNT3073928	Cucumis sativus	Brassica juncea	10.84	20.32	85.39	89	forward
CNT30607166	Cucumis sativus	Gossypium raimondii	9.74	21.92	83.75	80	forward
CNT30367748	Cucumis sativus	Sorghum bicolor	10.11	21.34	87.95	83	forward
CNT30120491	Cucumis sativus	Citrus clementina	10.11	23.38	89.16	83	forward

Expression of CNT3049908

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MIDNDDDNTYSNSKGHKHSKQLISLTSILI*

>peptide 2 (58 aa)
IIVHPYQFELCYKHKCLSIRTMLDLQYESIVITVYHGLSPRKNIVCIICYCNTLVNQY*

Sequence

>CNT3049908
ATATAATTGTTCATCCGTATCAATTTGAACTGTGTTACAAACATAAATGTTTATCAATACGAACCATGTTAGACCTACAATATGAGTCTATTGTAATAAC
AGTCTATCATGGTCTTTCACCCAGAAAGAACATAGTGTGCATTATTTGTTATTGCAATACACTAGTCAATCAATACTGAGGGGGAGATGGTAATTTCAGT
GATCTAAACACAAGATTCTTCTAAAAATAGAATGGTTATGCCAAAATCCAAATGTAGAAAAAAACACTTCCAACCATATTTGAATCCTCTTTAAAGCACT
GACTTTGGCAAGGAGACAAGAAAAAACAGGGGGGGAAAAGGCAAAAAGAGGAACAGCAAAGACACTTTTTCTTTTATCACATGATTGATAACGATGATGA
CAATACATATTCAAATTCAAAGGGTCACAAACACAGCAAACAACTAATTTCCCTAACTTCGATTTTGATTTAAACTCAAGGTTGATGGATGATAGCAATC
AAAGGACTAACCCACGAACTGGATGATCCAATTATATAATAAAGTCAGCAATCATCCCTATTTTTTTTTTCTTTTTTCTTTTTTCTTTTTTGGATTTTGA
GTTAAGATTATTATGATTGAGTGCTCTTGATGAGATAGTAGAAGGAGGAGGATGATGAAGCTCACTTGGCCATCATGACCTTCACAAATTCATCGTAGTT
AATCTGCCCATCGCCATCCACCTCCTCCTCTGTCAGTTTCTCGCCAAGATTTGTCATCACATGGCGGAGCTCAGCAGCGGAGATGAATCCATTCTGATCC
TTATCGAACACACGGAACGCC