« Back to Digitaria exilis search


Detailed information on CNT30499073


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 9e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522444Digitaria exilisSetaria italica54.969.6888.26409forward
CNT30224838Digitaria exilisHordeum vulgare23.0980.3788.95172forward
CNT30393967Digitaria exilisTriticum turgidum47.525986.16354forward
CNT3067083Digitaria exilisLeersia perrieri23.7646.9591.53177forward
CNT30684690Digitaria exilisTriticum urartu54.0963.5687.1403forward
CNT30369202Digitaria exilisOryza glumipatula47.5239.7387.01354forward
CNT30108138Digitaria exilisOryza longistaminata47.5243.787.57354forward
CNT30103236Digitaria exilisOryza rufipogon47.5235.8788.14354forward
CNT30574663Digitaria exilisOryza barthii48.5943.9987.57362forward
CNT30115779Digitaria exilisOryza nivara45.7764.9586.8341forward
CNT30603587Digitaria exilisOryza punctata45.6466.9385.88340forward

Expression of CNT30499073

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MVHMVDSSAGTYTHSLHHFTLRHHVVHSRHLADLTSRKHRAIRRRVQLLHAYCTTS*

>peptide 2 (32 aa)
ASKIEELDKLRTTRYDTQNADFRNPSRYLRKN*

>peptide 3 (34 aa)
MITCRGRSWWHRPMHCWRRGQQHGRRGSQWGPCQ*

>peptide 4 (79 aa)
MVEEVLNGALASNNGLHKESEHGEHGEAAILELLHLELSGGVRVIGEDLREDAAEGAQHGPPRVDHLQLTVARERLRVG*

>peptide 5 (81 aa)
MGPLPVTMACTKNPNMENMARRPFLSSFTLSSAAVSGSSARISGKTQPRAPSMAHREWITSSSRLRANVSGSAESPAVSHP*

Sequence

>CNT30499073
GCCAGTAAAATAGAGGAGCTTGATAAATTGAGAACAACAAGGTACGATACACAGAATGCAGATTTCAGAAATCCATCACGCTACTTGAGAAAGAATTAAC
CAACATGGCCACATCGATGGACAGGCGATGATTCACTCATGAAGAATGGTACACATGGTTGATTCATCAGCTGGCACGTACACTCATAGTTTACATCATT
TTACGTTACGTCATCACGTAGTACACAGCAGGCATCTTGCTGATCTGACTAGCAGAAAGCACAGAGCAATACGCCGGCGCGTGCAACTACTACACGCCTA
CTGCACAACAAGCTGACATGATCACTTGCCGGGGACGAAGTTGGTGGCATAGGCCCATGCATTGTTGGCGACGGGGTCAGCAACATGGTCGAAGAGGTTC
TCAATGGGGCCCTTGCCAGTAACAATGGCCTGCACAAAGAATCCGAACATGGAGAACATGGCGAGGCGGCCATTCTTGAGCTCCTTCACCTTGAGCTCAG
CGGCGGTGTCAGGGTCATCGGCGAGGATCTCCGGGAAGACGCAGCCGAGGGCGCCCAGCATGGCCCACCGCGAGTGGATCACCTCCAGCTCACGGTTGCG
CGCGAACGTCTCCGGGTCGGCTGAGAGCCCCGCCGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCTGTGAGGTACGACGGCGTCTGCTCCGAGAATGGG
CCCAGGTACTTGGGTCTGTCTGGGCCATACCTGATGATATTTATA