Detailed information on CNT30499008


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30585568Digitaria exilisEchinochloa crusgalli20.2522.0387.61113reverse complement

Expression of CNT30499008

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MVLWLVDKPGLLLRARHLGTVVHSFKSSSLNVQ

>peptide 2 (48 aa)
MMTTLALTTPNLWPEEVCFQPYPLRYALHSWLFLVKSRSLVEEIFVFS*

>peptide 3 (49 aa)
MPDHIWTSGHATSSCRFSHFLVGPTIRASFFLICFWFVILCWIDQSMAR*

>peptide 4 (47 aa)
PPSSSTHLQPGISALGIGRVAAERIRGLRLRRDARSYLDLWTCDFFL*

>peptide 5 (29 aa)
MAGGGMLSTLPFALRSSFLAIPREISLSC*

Sequence

>CNT30499008
CCGCCGTCTTCATCTACTCATCTCCAACCTGGGATCTCAGCCCTAGGCATCGGCCGCGTTGCCGCTGAGCGGATCCGTGGTCTTCGTTTGCGAAGAGATG
CCAGATCATATTTGGACCTCTGGACATGCGACTTCTTCCTGTAGATTCTCGCATTTTCTCGTAGGTCCAACAATTCGCGCTTCTTTTTTTTTAATTTGTT
TCTGGTTTGTCATATTGTGCTGGATTGATCAGTCGATGGCTCGATGATGACTACTCTTGCTTTAACCACACCGAACCTATGGCCGGAGGAGGTATGCTTT
CAACCTTACCCTTTGCGTTACGCTCTTCATTCTTGGCTATTCCTCGTGAAATCTCGCTCTCTTGTTGAAGAAATCTTTGTCTTCAGCTAGAGAACGAGGT
AGAAGGATTCGTTAAGATTGGCGAGCTTGGCAAAGGGCAGGTAGAAGGCATCTTTCGATGGTTCTTTGGCTTGTGGACAAACCTGGCCTTTTACTGAGAG
CCCGTCATCTCGGTACAGTCGTTCATTCTTTTAAATCCTCTTCCCTAAACGTGCAAGC