Detailed information on CNT30498755


BLAST search results

BLAST vs Swiss-Prot:
sp|P15192|CB22_PINSY, E-value = 2e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522183Digitaria exilisSetaria italica54.2940.2190.32310forward
CNT30640611Digitaria exilisNymphaea colorata40.9819.9185.04234forward
CNT30665660Digitaria exilisTriticum dicoccoides40.1132.6789.96229forward
CNT30685079Digitaria exilisTriticum urartu40.112589.96229forward
CNT30347916Digitaria exilisEragrostis tef32.430.8389.19185forward
CNT30100870Digitaria exilisOryza rufipogon40.9843.2590.6234forward
CNT30575574Digitaria exilisOryza barthii36.2522.891.3207forward
CNT30579144Digitaria exilisEchinochloa crusgalli43.2636.0691.5247forward
CNT30116740Digitaria exilisOryza nivara42.3828.2790.5242forward

Expression of CNT30498755

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MGPLPVTMACTKNPNMENMARRPFLSSFTLSSAAVSGSSARPNGSKAPPG*

>peptide 2 (70 aa)
TWPHRWTGDDSLMKKVHMVDSSVGTYTHSLHHFTSRHHVVHSRHLADLTSRKHRAIRRRVQLLHAYCTTS*

>peptide 3 (46 aa)
MGRRRRPGRPCRGSWWSGAALTRPSSLSPVSTTSTLAWSVREIVSV*

Sequence

>CNT30498755
ACATGGCCACATCGATGGACAGGCGATGATTCACTCATGAAGAAGGTACACATGGTTGATTCATCAGTTGGCACGTACACTCATAGTTTACATCATTTTA
CATCACGTCATCACGTAGTACACAGCAGGCATCTTGCTGATCTGACTAGCAGAAAGCACAGAGCAATACGCCGGCGCGTGCAACTACTACACGCCTACTG
CACAACAAGCTGACACGATCACTTGCCGGGGACGAAGTTGGTGGCATAGGCCCAGGCATTGTTGGCGACGGGGTCAGCAACGTGGTCGAAGAGGTTCTCA
ATGGGGCCCTTGCCAGTAACAATGGCCTGCACAAAGAATCCGAACATGGAGAACATGGCGAGGCGGCCATTCTTGAGCTCCTTCACCTTGAGCTCAGCGG
CGGTGTCGGGGTCATCGGCGAGGCCCAATGGGTCGAAGGCGCCGCCCGGGTAGACCTTGTCGAGGAAGCTGGTGGTCTGGTGCAGCGCTGACGCGGCCAT
CTTCTTTGTCTCCGGTGAGCACGACGAGCACACTGGCCTGGTCAGTGAGGGAGATTGTTTCAGTCTAGCTG