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Detailed information on CNT30498573


BLAST search results

BLAST vs Swiss-Prot:
sp|B3A0N2|NLTP_LYCBA, E-value = 2e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677036Digitaria exilisSetaria viridis19.7141.5990.4394forward
CNT30523932Digitaria exilisSetaria italica19.7126.8690.4394forward
CNT30555577Digitaria exilisOryza glaberrima14.2624.5585.2968forward
CNT30471439Digitaria exilisSaccharum spontaneum20.1336.0990.6296forward
CNT3068317Digitaria exilisLeersia perrieri20.1319.288.5496forward
CNT30371496Digitaria exilisOryza glumipatula20.1332.2191.6796forward
CNT30151138Digitaria exilisBrachypodium distachyon1320.9588.7162forward
CNT30104730Digitaria exilisOryza rufipogon20.1327.9991.6796forward
CNT30578036Digitaria exilisOryza barthii20.1332.2191.6796forward
CNT30117882Digitaria exilisOryza nivara20.1322.0791.6796forward

Expression of CNT30498573

Peptides detected in this lncRNA

>peptide 1 (82 aa)
LLKQARKGNESSRYLEQSTEGLMVYGMLTPHLDGMLAALPSLRPLMPAAADLRQLQAARLSAVEAAAARSTAATTASTTTCC*

>peptide 2 (57 aa)
MLALLLAAECLASCWDCCSDDGASGIAGEVSARECWSLNRLSAHFSIRMDCMSCSMK*

Sequence

>CNT30498573
GTTTGTTGAAGCAAGCAAGGAAAGGGAATGAAAGTAGTAGGTACTTGGAGCAGTCGACGGAGGGGCTGATGGTGTATGGGATGCTGACGCCACACTTGGA
TGGGATGCTGGCGGCGTTGCCGAGCTTGAGGCCGCTGATGCCGGCGGCGGCGGACTTGAGGCAGCTGCAGGCGGCGCGCCTGTCGGCGGTGGAGGCGGCG
GCGGCGAGGAGCACCGCGGCAACGACGGCGAGCACAACCACCTGCTGCTGAGAGCGAGCCATGCTTGCTTTGCTACTAGCTGCTGAGTGCCTAGCTTCTT
GTTGGGATTGTTGTAGTGATGATGGAGCAAGTGGTATTGCTGGTGAGGTGAGTGCAAGGGAATGCTGGTCTTTAAATAGGCTCTCGGCTCATTTCTCGAT
CCGTATGGACTGCATGTCGTGTAGTATGAAGTGATGACTGACGAGGAGCAGACGATGGATGATACATGGGGCCGACG