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Detailed information on CNT30498372


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 4e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697405Digitaria exilisOryza sativa35.373790.48168forward
CNT30677012Digitaria exilisSetaria viridis44.4229.9395.73211forward
CNT30524410Digitaria exilisSetaria italica45.0527.3795.79214forward
CNT30184672Digitaria exilisSecale cereale21.6831.2189.32103forward
CNT30295002Digitaria exilisTriticum aestivum45.0541.4790.65214forward
CNT30390869Digitaria exilisTriticum turgidum26.7427.0290.55127forward
CNT30555388Digitaria exilisOryza glaberrima28.4226.7993.33135forward
CNT30438779Digitaria exilisAegilops tauschii32.8424.7287.82156forward
CNT30249379Digitaria exilisAvena sativa28.4234.0188.89135forward
CNT30663056Digitaria exilisTriticum dicoccoides26.9552.0392.97128forward
CNT30465769Digitaria exilisSaccharum spontaneum44.2136.5294.29210forward
CNT30137065Digitaria exilisLolium perenne42.7444.4290.15203forward
CNT30353507Digitaria exilisEragrostis tef45.6816.9893.55217forward
CNT30365399Digitaria exilisSorghum bicolor60.2143.8789.51286forward
CNT30597113Digitaria exilisOryza meridionalis44.8428.484.04213forward
CNT30371307Digitaria exilisOryza glumipatula44.8419.6784.04213forward
CNT30103835Digitaria exilisOryza rufipogon44.8444.4784.04213forward
CNT30578126Digitaria exilisOryza barthii44.8425.392.49213forward
CNT30117889Digitaria exilisOryza nivara37.8931.8695180forward
CNT3039554Digitaria exilisMarchantia polymorpha20.2126.2391.6796forward

Expression of CNT30498372

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MKKANMENMASRPFLISFTLRMAAWSGSLARPQG*

Sequence

>CNT30498372
CGATCAATTACTTAAGTATCTCAGGCACAATTTAAATCAGTAGTCTTTTCGGAGATCAGAACGAAATTGTTTCTTCCCCCCTCTTGATAATTTACACTCA
TGGCACATTCTTCTTCAGACCCTCACACACACTAGCTCTCCCCTGCCGGTAAAATCAAACGCAGCAGCCACATTGCCACCGGCGTTCTTACAGGCTGGGC
GTCCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGTTGTTGCCGAAGGGGTCACTGAGGTGCTTGGTCAGGTTCTCGACCGGGCCCTCGCCGGTGACGT
AGGCCTGGATGAAGAAGGCGAACATGGAGAACATGGCCAGCCGGCCGTTCTTGATCTCCTTCACCTTGAGAATGGCAGCCTGGTCAGGGTCGCTGGCCAG
GCCTCAGGGATGACGGCACCGGCGGCGCCGAGCATGGCCCACCTGGCGTGGATCAGCTCGTAGGCCTGATACCTG