Detailed information on CNT30498154


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 3e-42

BLAST vs NONCODE:
NONSTUT000620, E-value = 3e-23

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693219Digitaria exilisOryza sativa47.1451.8491.21239forward
CNT30676277Digitaria exilisSetaria viridis44.3877.5994.67225forward
CNT30523741Digitaria exilisSetaria italica46.7559.8594.51237forward
CNT30190495Digitaria exilisSecale cereale42.4141.5993.49215forward
CNT30369993Digitaria exilisOryza glumipatula47.1459.990.38239forward
CNT30576255Digitaria exilisOryza barthii47.1414.9490.38239forward
CNT30116557Digitaria exilisOryza nivara47.1447.790.38239forward

Expression of CNT30498154

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MSRCWSGGMPSLSWILAFTLSIVSEDSTSKVMVLPVRVFTKICICKRTRYVG*

Sequence

>CNT30498154
TTGCACATCAACAGCTGGCTCAATCAATCAAAGAACACTTGATCACAGAGAATATTAAGAACAAATACTGAGAAATATAGTATTTAGACAGGGCCATCAC
AATCCTTACATGGTACCATACTAGCACAAAGACACAGAGTACTTATTTGGCGTATCAAAAACTCATCTGACTATGACATAACGACACCAAAGCTAATGCT
GCGCCAGAGCTAGCTCACAGACCACCACGCAGGCGGAGAACGAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGGCCGTCCTCGA
GCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTGTCGATCGTGTCCGAGGACTCGAC
CTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATCTGTAAAAGAACAAGGTATGTGGGTTAACACCACAGGCTCAAATCTGAATCA
ACAAGTG