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Detailed information on CNT30498115


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7F9I1|CLPC1_ORYSJ, E-value = 1e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693027Digitaria exilisOryza sativa49.0543.2285.6389forward
CNT30676635Digitaria exilisSetaria viridis36.4483.0587.2289forward
CNT30287617Digitaria exilisTriticum aestivum39.655.1885.67314forward
CNT30254596Digitaria exilisAvena sativa44.5126.6283353forward
CNT30658759Digitaria exilisTriticum dicoccoides40.7354.5686.69323forward
CNT30311914Digitaria exilisCamelina sativa17.0221.8480.74135forward
CNT3062430Digitaria exilisArabidopsis lyrata35.0624.1177.7278forward
CNT30717839Digitaria exilisMalus domestica golden38.0859.4577.81302forward
CNT30150411Digitaria exilisBrachypodium distachyon40.7363.9683.59323forward
CNT30101573Digitaria exilisOryza rufipogon37.5835.1886.58298forward
CNT30581271Digitaria exilisEchinochloa crusgalli17.2825.8587.59137forward
CNT30558331Digitaria exilisPanicum hallii57.555.0787.5456forward

Expression of CNT30498115

Peptides detected in this lncRNA

>peptide 1 (43 aa)
PLHYTIIQQCYLRLEQVTSIHNREIYDRASDIRVIPASRALMN*

>peptide 2 (41 aa)
SHYIIQLSSNVICDLNKLHPYITGRSMTGRAISVSSLLAEP*

>peptide 3 (57 aa)
MIHVTAGNWIFDYSFKKGGKKGNLRSSILFSLNVSLPNHFHSIPTASLSTKKSTKER*

>peptide 4 (39 aa)
MCLCLIISIAFLLPHFQPKKVPRKDKAPNGVANDHEEPS*

>peptide 5 (33 aa)
MSAISFTSNFVSCRKTIISSNLFKNSGRKYCFNS

>peptide 6 (33 aa)
MAESPSFTSPASIFSARLSSRSLMIARRKGRAP*

Sequence

>CNT30498115
AGCCATTACATTATACAATTATCCAGCAATGTTATTTGCGACTTGAACAAGTTACATCCATACATAACCGGGAGATCTATGACAGGGCGAGCGATATCCG
TGTCATCCCTGCTAGCAGAGCCCTAATGAACTAATGATACACGTAACTGCAGGAAACTGGATATTCGATTATTCTTTCAAAAAGGGGGGGAAAAAAGGTA
ACTTAAGATCTAGCATACTCTTTTCACTAAATGTGTCTCTGCCTAATCATTTCCATAGCATTCCTACTGCCTCACTTTCAACCAAAAAAAGTACCAAGGA
AAGATAAAGCGCCTAATGGGGTGGCGAACGACCATGAAGAGCCCAGCTGACTTGTAAAAAAGGCCGTATTTCGGACCAAAGATAATTTTCGGCTCAGTTA
GATACTGAGAGCAGGTTCCAGAGGCTCAGCAACACCACTACCACCATTCAGGACTATTACTTTGCCGTCAGAATCCACATCGACAATGGCAGAGTCACCT
TCTTTCACCTCACCAGCAAGCATCTTCTCTGCCAGACTATCCTCCAGAAGCCTCATGATAGCACGCCGCAAAGGCCGGGCACCATAACTCGGGTTGTAAC
CTTCATCAACAATTCTGTCACGGAACTTCTCTGTAACCTGGAGGTTAATTTCCTTTGCCTTCAGCCTGTCGAACACTTCTTTCAGCATAATGTCTGCGAT
CTCCTTCACCTCCAATTTCGTTAGCTGCCGGAAGACAATCATCTCATCCAATCTGTTCAAGAATTCTGGACGGAAGTACTGCTTCAACTCCTC